PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_198550_pdtg.t1

Common Name

SOVF_198550

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 326aa MW: 36174.5 Da PI: 4.3795

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_198550_pdtg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.4	2.6e-13	11	95	1	91
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk++ ++d++++ + +p f+e+ + k +k+++l+++ W v + + ++ ++++GW++ v++ L g+f+vFk+dg +fe Sp_198550_pdtg.t1 11 FFKTF-RPDNHSE-TMKIPDAFLEHLSAK--IPKKVVLKNRFDDCWPVGI--VETEDGLFFQEGWSKLVSDYPLLGGEFMVFKFDGYCTFE 95 88888.4555555.59*****666655..7889***********..99999************************99877664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-16	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-17	4	97	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.76E-11	9	97	No hit	No description
PROSITE profile	PS50863	10.475	9	102	IPR003340	B3 DNA binding domain
SMART	SM01019	2.6E-10	11	107	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-10	11	94	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGSSEEKLPE FFKTFRPDNH SETMKIPDAF LEHLSAKIPK KVVLKNRFDD CWPVGIVETE 60 DGLFFQEGWS KLVSDYPLLG GEFMVFKFDG YCTFEIRTPN TSHFKKQPVT GCFAGQEEAK 120 TPTEEDNEEE EDLVMDQAEN SATKKNLGRG GNYSFTGYHV KNLGKGITDL FPSNNPFFVT 180 KIRKNDCRND LIIPHDIRKD SGVKFRDRVK IQEPNGRVFQ GKIVADRMAS EQPASTSGRR 240 PGKEPVNDDI DMATGEYSDG DSIFEDSAGK DFDDHRGGDG DDAGVSGRND TDIGDDGIGS 300 DDDDPADVIV ADVLADEAKE QXHGCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855106.1	1e-165	B3 domain-containing protein REM20-like
TrEMBL	A0A0K9QCY4	0.0	A0A0K9QCY4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	2e-15	B3 family protein