PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_199540_tmzd.t1
Common NameSOVF_199540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 670aa    MW: 73772.5 Da    PI: 6.4602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_199540_tmzd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07280300526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  Sp_199540_tmzd.t1 280 PCPDFRK-GACRRGDMCEYAHG 300
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1510134IPR020683Ankyrin repeat-containing domain
SMARTSM0024829001040IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.5E-1611142IPR020683Ankyrin repeat-containing domain
CDDcd002041.45E-1312135No hitNo description
PfamPF127961.0E-920124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.54757150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00835787IPR002110Ankyrin repeat
PROSITE profilePS5008811.91592127IPR002110Ankyrin repeat
SMARTSM002480.001392124IPR002110Ankyrin repeat
SMARTSM003564.0E-6275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4279302IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582280302IPR000571Zinc finger, CCCH-type
SMARTSM0035640310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MNHLTVETVD TFSSLLEVSA NNDVEAFKRL IEDDPSGIDE PGLWYVRKKG SKQMVYEHRT  60
PLMVASIYGS MDVLKLILSL SITDVNRSCG EDRSTALHCA VSGGSVNAVD AVKLLLEAGA  120
DHNALDANGN RPFDVIMVSP KQNDIKLALE ELLAGHGSIS ERILRLSTTT SNSNSPPLSS  180
SPVNGSPSSY SDSPPSPINS KFDDIQATSY TSEKKEYPID PSIPDIKNSI YATDEFRMYS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGP SCSRRVCFFA HLPEELRPLY VSTGSAVPSP RSSASSSMDF  360
AAAMNFMPGS PSSLMSPSAF TPPMSPSAAN GISHSSLAWP QPNVPSLRLP GSNLQSSRLR  420
SSLNARDISA EQFEMLQDYE LQQQQHLLSE FSCLSMNPNS LTRSNVRSKT LNPSNLDDLF  480
SAESSSPRYN DQGMGSCLYS PTHQSAVFNQ FQQQQGMLSP INTNFSPKGV VEHPLLSGRM  540
SPRSVEPISP MSARASMIQR EQQLHQFRSL SSRDLGTSLG AIVGSPVHSW SRWGSSNGKP  600
DWGTNTDELG KLRRSSSFEL GNNGEEPDLS WVQSLVKESP TDIKEKVAGP TSTGVDSCYS  660
NELVDMAERF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858675.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9QCP20.0A0A0K9QCP2_SPIOL; Uncharacterized protein
STRINGXP_010672777.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]