PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_199900_dtph.t1

Common Name

SOVF_199900

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

DBB

Protein Properties

Length: 201aa MW: 22666.3 Da PI: 6.1063

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_199900_dtph.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.5e-08	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ +e++e++ fC ++ lCe C H+ Sp_199900_dtph.t1 4 QCDVCEKQEASVFCAADEAALCEGCDYRVHQA 35 7*************************999965 PP
2	zf-B_box	24.5	5.7e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e++ C+ ++e ++ lfC++++ lC++C +Hk Ht Sp_199900_dtph.t1 54 EAPLCDICQERRAFLFCKEDRAILCRECDIPIHKAneHT 92 6799*****************************878876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.883	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.67E-4	3	35	No hit	No description
SMART	SM00336	4.1E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.5E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.869	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-12	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.5E-6	54	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.61E-8	56	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MKIQCDVCEK QEASVFCAAD EAALCEGCDY RVHQANKLAT KHLRFSLLHP CFKEAPLCDI 60 CQERRAFLFC KEDRAILCRE CDIPIHKANE HTQCHNRYLL TGVKISASSA TYPITSPKSS 120 TSSGPNSESH TKSSVTISSS YDHDMFNQQH SYNTSTTTPS TTTIYDQINE EGISEYLMET 180 LPGWKVEDFL DSSSASHHFY F

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849954.1	1e-149	B-box zinc finger protein 20-like
Swissprot	Q0IGM7	7e-70	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A0K9QAT5	1e-148	A0A0K9QAT5_SPIOL; Uncharacterized protein
STRING	XP_010690797.1	6e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	3e-63	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]