PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_200090_zjjj.t1
Common NameSOVF_200090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 255aa    MW: 29164 Da    PI: 7.6022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_200090_zjjj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0595117223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+ks++++ +L  H++  H
  Sp_200090_zjjj.t1  95 SCSVCHKSYPTQRLLSIHLSEvH 117
                        6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.66792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003550.4494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003551.6132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMQVEEGKS GSEFPYWKPV HRKFAPDSPF FSSGDVERQL LDKQVALVLT EDEMQQLLDM  60
EDHEREIFCP IVGCGARLNS LEGFEDHYHS CHTASCSVCH KSYPTQRLLS IHLSEVHDSY  120
FKAKVSKGFS MYECLVETCG LKFKSYKARH QHLVDKHKFP ITYEFYKKAH LSKKQRQKYG  180
RKPALCKEET SNAMPLDNEA DDSMEDLTSA ISQLSTSDSV PSSISFGHRH SRGLAFVPRS  240
VQRERRPGYS PSTMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863754.10.0zinc finger protein 511
TrEMBLA0A0K9QAW40.0A0A0K9QAW4_SPIOL; Uncharacterized protein
STRINGXP_008379104.11e-112(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-104zinc ion binding;nucleic acid binding;zinc ion binding