PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_201100_emga.t1
Common NameSOVF_201100
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 160aa    MW: 17942.3 Da    PI: 5.2472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_201100_emga.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.7e-1955101148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEd+ll  avk++  ++Wk+Ia+++  gRt+ qc +rwqk+l
  Sp_201100_emga.t1  55 KGGWTEEEDDLLTAAVKKYNAKNWKRIAEHFS-GRTDVQCLHRWQKVL 101
                        688*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.54250105IPR017930Myb domain
SuperFamilySSF466891.28E-1953113IPR009057Homeodomain-like
SMARTSM007171.9E-1754103IPR001005SANT/Myb domain
PfamPF002494.3E-1755101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2257118IPR009057Homeodomain-like
CDDcd001671.84E-1558101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MIEVKNEDEE WNLRSPDGVT IASSSSISNS SCDNATPRSN PLHGRTSGPT RRSTKGGWTE  60
EEDDLLTAAV KKYNAKNWKR IAEHFSGRTD VQCLHRWQKV LNPELVKGPW TKEVSLTILS  120
LSLWNFFLLL WLDIVLVDVD DVVMPVYNVL DSLISSLSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-18551216123MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-18551216123MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863232.13e-76transcription factor MYB3R-2-like
TrEMBLA0A0K9QCM91e-112A0A0K9QCM9_SPIOL; Uncharacterized protein
STRINGXP_010676520.12e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.19e-35myb domain protein 3r-4