PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_203370_mpzd.t1
Common NameSOVF_203370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 152aa    MW: 17384.9 Da    PI: 5.9438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_203370_mpzd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-1451140698
                        ..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
                 B3   6 tpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                        ++s+v+     ++l lp +f +   +k +    + + ++  rsWe ++   ++ +++ ++  Wk Fvk+n+Lk+gD++vF+ +  + s  ++
  Sp_203370_mpzd.t1  51 KKSHVGDAhsvCQLKLPAHFSRVLPNK-RV--PI-ILTRGERSWETTY--HGTHKKFDIR--WKVFVKDNKLKVGDVCVFEAMeCNdSALKF 134
                        45555544455999******9655433.22..34.456789*******..9999998888..*******************66566688889 PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v+v+r
  Sp_203370_mpzd.t1 135 KVQVLR 140
                        998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1542140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-1642140IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-1344140No hitNo description
PROSITE profilePS508639.78449142IPR003340B3 DNA binding domain
SMARTSM010194.2E-450142IPR003340B3 DNA binding domain
PfamPF023623.3E-1158140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MNEVGFDQPK SELEPESERE GEPVFPTDSC EEVDVDIEPL SGKPFCHVVL KKSHVGDAHS  60
VCQLKLPAHF SRVLPNKRVP IILTRGERSW ETTYHGTHKK FDIRWKVFVK DNKLKVGDVC  120
VFEAMECNDS ALKFKVQVLR GDFPCMLLDK ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867247.11e-109B3 domain-containing protein Os06g0112300-like
TrEMBLA0A0K9Q9T31e-107A0A0K9Q9T3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010694213.15e-49(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-08related to vernalization1 1