PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_203670_kzwu.t1
Common NameSOVF_203670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 490aa    MW: 52425.2 Da    PI: 9.6443
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_203670_kzwu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.79.5e-1694181186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk +k+   ++  +  s++p+fd+l+
  Sp_203670_kzwu.t1  94 CWSEGATSVLIDAWGERYMELSRGNLKQKHWKEVADIVssreDYTKVPKTDIQCKNRIDTVKKKYKIEKQKVASG--GGPSRWPFFDRLD 181
                        7*************************************86555556677889*********************97..66778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2692183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDDEEEIRSQ PPSPESEPHS PPSGQITVTV AAAPPSSTTP SSTPPPSSLT LALPIQQFPR  60
PLAIISSGCG GGGSVGGGSS GGGGGGGGGG REDCWSEGAT SVLIDAWGER YMELSRGNLK  120
QKHWKEVADI VSSREDYTKV PKTDIQCKNR IDTVKKKYKI EKQKVASGGG PSRWPFFDRL  180
DRLIGPAATP TTSKGSGSGL GLGPMSTATV SVSTGGLSSH GKAVPVGIPV GVRPLPLPFS  240
SHSLQTPPHL QQWPQLKQQF QFSPVQQPVR YNSINSNSTS SPAAATPASN NVNRAPLEQQ  300
LQFHKHQQEL QFRRGEESDT DQEEWSHDDS GDSLPPERTG FDHRRKRPRM EVVNRGGGER  360
VKVKGKKSRE KKAAAVKVWG NSVRDLTRAI MKFGEAYESA ESAKLQHIVE MEMQRMKFTK  420
ELELQRMKFM MKTQLELSQL NGNGSNNSDS RGGGGGGGGS GGGGGGGGDS NHNHHLHENH  480
LNHANSDSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16678SGCGGGGSVGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851201.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0K9Q9Q40.0A0A0K9Q9Q4_SPIOL; Uncharacterized protein
STRINGXP_010685259.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-49sequence-specific DNA binding transcription factors