PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_205690_wjat.t1
Common NameSOVF_205690
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 343aa    MW: 37328.3 Da    PI: 9.1666
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_205690_wjat.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.2e-31174230158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RR++Rak+e ekk+ +k+rkpylheSRh hAlrR+Rg gGrF
  Sp_205690_wjat.t1 174 EEPVYVNAKQYHGILRRRKSRAKAEMEKKV-IKARKPYLHESRHVHALRRARGAGGRF 230
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.439173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-26175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-23176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-23207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPSKADMEDR FQADGGDKPQ NMLFGQPWWR GLNNNGVSPT SASSDSSARS SSGEPVNGSS  60
MAGPFSLHIN GMQDTGASVC REIHTALAPQ LVAERDSIQE QQALKQVPSS MPQNLGDQSN  120
SQMELVGQSI ALTSYPFQDP TFGGVMSYAQ VQQVIPQLYG MHQSRMPLPL AMEEEPVYVN  180
AKQYHGILRR RKSRAKAEME KKVIKARKPY LHESRHVHAL RRARGAGGRF LNTKKLDDND  240
ADTSSKTDTN TATNLQIYSA GSARAEHLST TTTYNGNAGS SWNHQEARGG FMISDMHKAD  300
SHSNGSTNVH GLSSTYLSFS GSNEERSNYS QGGMKVNGAV SVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20174237265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837729.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_021837730.10.0nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A0K9Q9440.0A0A0K9Q944_SPIOL; Uncharacterized protein
STRINGXP_010695208.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.37e-38nuclear factor Y, subunit A1