PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_206710_gmkh.t1
Common NameSOVF_206710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 1195aa    MW: 134313 Da    PI: 8.7851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_206710_gmkh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06221243326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++f+r G C +G++Ck+ H+
  Sp_206710_gmkh.t1 221 RSPCQHFLR-GKCDFGASCKRWHP 243
                        689******.**********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-46596IPR000571Zinc finger, CCCH-type
SMARTSM003560.46894IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1556895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.021141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807218245IPR000571Zinc finger, CCCH-type
SMARTSM003560.054219244IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4221243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868304331IPR000571Zinc finger, CCCH-type
SMARTSM003560.086305330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718436463IPR000571Zinc finger, CCCH-type
SMARTSM003560.004437462IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4440465IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10002.0E-149621155IPR023214HAD-like domain
PROSITE profilePS5096927.1979621144IPR004274FCP1 homology domain
SuperFamilySSF567843.46E-229621154IPR023214HAD-like domain
SMARTSM005771.0E-79651127IPR004274FCP1 homology domain
PfamPF030311.1E-249681151IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1195 aa     Download sequence    Send to blast
MEQTVSERPL SQEQHINQLH THHNGTVNTS GAHLKQDPTE RWCSRRWTGW RGTTQSGSYG  60
GEHLRQDKVQ MPICRDNFRG KCSRGAICKY QHSESDEHDR SRFCQSEREK LGAVATLGNS  120
HFYRANDGTD STPRFSSRGG RIRSPCRRFQ SGRCYSGASC PYLHPEMASF DKTIHDSRVD  180
QQQVHRAVRD PGFGGRNRDN FTRISQEHVG ANNANTESRS RSPCQHFLRG KCDFGASCKR  240
WHPVNTYVGS RHDLNTQHHQ GYAATSSYPV SGERSRDVIL RTTHEYAEAN MHNQLRTGAY  300
SRDPSSRSPC RNFLSGKCYR GSSCVHLHPV TVYDRPRFDL WNAQQNQGVS VNSRAPHFAD  360
GSIATTFGTS QIHEDSKNYS NQPYRDTHAY HEPKKARPSK DGVQLAGNRK NMDVTSRSWS  420
YEGQRNRLTD DFGGDKTIRE VCLRFTKGRC DLGEHCRYLH GYHEYATSTS NWSGKPNTEA  480
AGDSRNFGVE NQYANTAMAQ DRAGIKNYQM SLGKSKHTES SVLPSDGFFD KEAKGQSVDV  540
AMEPKIRKGD ATTMDGLKCD ISGEKVESFC NSAEGRDNIS LWSRPFKRQR NSSPPFPSQE  600
DFHCPKFRRY DSWVGSRGGR SYNVAQYQYS DRRSYRYEKP VFHANSQRRT NGKETSVNPC  660
SCENNDSNFA TPHRCKEVVT LGSQLEQRAD GGHGSSIVIA SKKNEADSAR CALQPSNTNQ  720
NNEVLATDSV AVDSSGGSAT ISQEALESGS TRSCGRNVIS PLAIGQTMLE KESNVNMPID  780
FGQEGKETTL DLMTSLKTYS RKNSRKRLPV SCEETMKVEV IDPKQGTPSG SLVETSLSEP  840
NSVPVNLRAS NDSDPVKPQE QKKRKKKRSK SASCEETMVE DEASKLGTPI SSLVETNGND  900
LEKVTNDDLP VIQQDKKHMK RHSESASCEE PMKEEGTDAS KEGIDASKEA MPVSSLVGNL  960
VPNSRKNLLV LDVNGILVDV VTDFHPRYKP DTRVAAKAVF KRPFCDDFLK FCFERFDVGI  1020
WSSRTNMNLN KVVDFLMRDT KNKLLFCWDR SHCTATEYKT LENKDKPLVL KELRYLWWDN  1080
KGVSLPWDKG YYNETNTVLV DDSPYKALRN PPHTAIFPHP YSFKNAGDNA LGPGGDLRVY  1140
LERLAEAENV QKFIQDNPFG QRPLSKTSSS WQFYAKIAGT YGSQQGKYAN IATHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1861865KKRKK
2861867KKRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856333.10.0uncharacterized protein LOC110795619
RefseqXP_021856334.10.0uncharacterized protein LOC110795619
TrEMBLA0A0K9Q8W90.0A0A0K9Q8W9_SPIOL; Uncharacterized protein
STRINGXP_010695241.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-07floral homeotic protein (HUA1)