PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_206840_pykf.t1

Common Name

SOVF_206840

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 571aa MW: 64406.4 Da PI: 6.9008

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_206840_pykf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.9	3.3e-113	198	569	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cA+av+s dl+ a++ L+++++++sp+gd++qRla+yf+++L+arla+++s+++ + + s ss+ l+a+++++ + P + Sp_206840_pykf.t1 198 LRTLLTQCAQAVASFDLRSANERLKQIRQHSSPYGDSIQRLAHYFANGLEARLAGTGSTVSGNIVDARIS---SSDFLKAYRVYVSAIPGKR 286 6789*************************************************999999888777776...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 s+++aN aIl+ +e+++++HiiDf++ GlQWp+L+q La+Rp+gpp+lRiTg++ p++g +e++e+tg+rLa ++e+++vpf++++ + Sp_206840_pykf.t1 287 KSFFLANTAILKLAEKATTIHIIDFGVLLGLQWPCLIQNLAKRPGGPPKLRITGIDYPQQGfrPAERVEATGRRLAGYCERFNVPFQYQP-I 377 ********************************************************9*************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++++e+++le+ +++ +E ++Vn+ ++ +llde+v+++s++d++L+lv++++P+ +++ + +n++ F +rf eal +ysa+fd +e++ Sp_206840_pykf.t1 378 VQKWESIKLEDVKIEGDELVIVNCLFRSGSLLDETVEVDSKKDAFLRLVRKINPRAFIHGVVNGTYNAPFFITRFREALFHYSAIFDIFEET 469 99************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pre++er +E e+ g+e+ nv+acegaer +r et+++W+ r ++aGFk++p++ + ++ ak++++ + + + +e++ ++++gWk+r+ Sp_206840_pykf.t1 470 IPREDHERLLIESEVYGKEALNVIACEGAERMHRPETYKQWQVRTTRAGFKQLPFDREFVSRAKAMVKANYHKDFVADEDRYWMLQGWKGRT 561 *******************************************************************888************** PP GRAS 367 LvsvSaWr 374 L ++S W+ Sp_206840_pykf.t1 562 LCALSIWE 569 *****5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.944	172	549	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-110	198	569	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
DYRALQATEK SLYDALGEEY SPSDNPASYL DPSVENPDVV LGRIWDDSFG IEGYSNGDTT 60 VESHWVNQTP SEPFLSLNDL SQSFLELNSP SSGTLSSVAP EKEKKAVSRS TRKKNHQRDD 120 DGLGGGRSSK HQASSNEDYV EMKQYDDILL CREENDDVAG GDKESSPNEV SKKLQGKGSK 180 GKTTRGKKQN NVVEEVDLRT LLTQCAQAVA SFDLRSANER LKQIRQHSSP YGDSIQRLAH 240 YFANGLEARL AGTGSTVSGN IVDARISSSD FLKAYRVYVS AIPGKRKSFF LANTAILKLA 300 EKATTIHIID FGVLLGLQWP CLIQNLAKRP GGPPKLRITG IDYPQQGFRP AERVEATGRR 360 LAGYCERFNV PFQYQPIVQK WESIKLEDVK IEGDELVIVN CLFRSGSLLD ETVEVDSKKD 420 AFLRLVRKIN PRAFIHGVVN GTYNAPFFIT RFREALFHYS AIFDIFEETI PREDHERLLI 480 ESEVYGKEAL NVIACEGAER MHRPETYKQW QVRTTRAGFK QLPFDREFVS RAKAMVKANY 540 HKDFVADEDR YWMLQGWKGR TLCALSIWEP C

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

DYRALQATEK SLYDALGEEY SPSDNPASYL DPSVENPDVV LGRIWDDSFG IEGYSNGDTT  60
VESHWVNQTP SEPFLSLNDL SQSFLELNSP SSGTLSSVAP EKEKKAVSRS TRKKNHQRDD  120
DGLGGGRSSK HQASSNEDYV EMKQYDDILL CREENDDVAG GDKESSPNEV SKKLQGKGSK  180
GKTTRGKKQN NVVEEVDLRT LLTQCAQAVA SFDLRSANER LKQIRQHSSP YGDSIQRLAH  240
YFANGLEARL AGTGSTVSGN IVDARISSSD FLKAYRVYVS AIPGKRKSFF LANTAILKLA  300
EKATTIHIID FGVLLGLQWP CLIQNLAKRP GGPPKLRITG IDYPQQGFRP AERVEATGRR  360
LAGYCERFNV PFQYQPIVQK WESIKLEDVK IEGDELVIVN CLFRSGSLLD ETVEVDSKKD  420
AFLRLVRKIN PRAFIHGVVN GTYNAPFFIT RFREALFHYS AIFDIFEETI PREDHERLLI  480
ESEVYGKEAL NVIACEGAER MHRPETYKQW QVRTTRAGFK QLPFDREFVS RAKAMVKANY  540
HKDFVADEDR YWMLQGWKGR TLCALSIWEP C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-52	204	570	24	379	Protein SCARECROW
5b3h_D	2e-52	204	570	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021867326.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-163	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0K9QAZ3	0.0	A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685731.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-160	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]