PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_207030_ucfs.t1
Common NameSOVF_207030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 285aa    MW: 31351.5 Da    PI: 5.4508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_207030_ucfs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1763126255
                AP2   2 gykGVrwdkkrgrWvAeIrd.pse..ng.......kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr++  +g+WvAeIr+  s+   g       kr +r +lg+f ta eAa a+++a+k ++g
  Sp_207030_ucfs.t1  63 TFRGVRQRT-WGKWVAEIREpISSsaTGygnttqsKRsRRLWLGTFSTAIEAALAYDEAAKVMYG 126
                        69****999.**********555588445568987558***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.59E-2662134No hitNo description
SuperFamilySSF541711.24E-1763135IPR016177DNA-binding domain
SMARTSM003805.3E-3263140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2763135IPR001471AP2/ERF domain
PROSITE profilePS5103221.62863134IPR001471AP2/ERF domain
PfamPF008476.2E-1364126IPR001471AP2/ERF domain
PRINTSPR003673.8E-96475IPR001471AP2/ERF domain
PRINTSPR003673.8E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNARRRRNGY NSVAEILAKW KIQNQQYGST IEERKKNTQK GPARGSRKGC MPGKGGPENL  60
GCTFRGVRQR TWGKWVAEIR EPISSSATGY GNTTQSKRSR RLWLGTFSTA IEAALAYDEA  120
AKVMYGPSAI LNFPSQQNVE HEDQALCGSN MQSTTASEST EGSENYKGFN EELKSPCASQ  180
VVDVGGSKEE FGMGSVNSNG GSYLNLGFDY THDWVMEPLD GFGGVNFGLK QEDDYEFDQN  240
GLFYSDSSDS MANYKLQQPL SGPLGIDFIT SSDFVRSNTN LDGLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1664134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866064.10.0dehydration-responsive element-binding protein 2E-like
TrEMBLA0A0K9QAX70.0A0A0K9QAX7_SPIOL; Uncharacterized protein
STRINGXP_010676824.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.13e-30ERF family protein