PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_207850_kpqu.t1

Common Name

SOVF_207850

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 892aa MW: 97951.6 Da PI: 6.856

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_207850_kpqu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.5e-19	311	411	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Sp_207850_kpqu.t1 311 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPIKIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-P 400 99************************555566778***********99899999999.*******************876.7 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++lv++++++ Sp_207850_kpqu.t1 401 EGKLVMGFRKA 411 77788877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-20	308	410	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-30	308	416	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.53E-23	309	410	No hit	No description
PROSITE profile	PS50863	11.265	311	412	IPR003340	B3 DNA binding domain
SMART	SM01019	4.9E-23	311	412	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-16	311	411	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.634	571	621	IPR011124	Zinc finger, CW-type
Pfam	PF07496	2.0E-10	576	618	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MGSKTCMNIL CGTTSSAEWR TGWNLRSGEL ANLCDKCGST FERQIYCEEY HADDSGWREC 60 VTCSKRLHCG CIASLALIEL LDCGGVRCIG CARISDPSLS LNAGKCEGSG PCDVTEKSAG 120 PKQLGNYKEN NWSNQLSIMQ NSNSNLAFGL LKQEELSLPP AQAGTTWISN LAQSSMGSFQ 180 KTRFDVSTSS MQAKDNYGAI THPNLNIALG IPTGNLQATS SAIVDGMEQR KMSDTFHQGF 240 TSPNLLPTPP KLAFSPVPDT NPVVIPQIRV ARPPVEGRGR HQLLPRYWPR ITDQELQQIT 300 GDSNCTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPIKI QDVKGKEWLF 360 QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNSGSVQDA 420 ASPAIRNASL SSESFFPGVI ENLPVMSGCS GLLQSMKGST DAHMNALSRQ LDSSGGNVPW 480 NNSEKCNERT EEVTLTLERK KSRNIGSKSK RLLIDNQDVL ALRLTWEEVQ GMLRPPQSAR 540 PSVVVIEDYE FEEYEEPPVF GKSSIFTARP SGAVEQWAQC DNCSKWRRLP GDILLPPKWT 600 CADNAWDQSR CFCSASEELG PRELENLRHL SKDSAKRRMV MASRMAQEQE SSGLNALASA 660 AVLGDNTNDP GTSSVAATTR HPRHRPGCSC IVCIQPPSGK GKHKSTCTCT VCMTVKRRFK 720 TLMMRKKKRQ SEQEAEIALK NYQKQIPKED VKADVENNDK SHLEDRNKTE DELHVGPTQT 780 NNDGGQNPMS LLAESGKSLD LNFHPEREED LRMRSAPSSL TNLLQLASLP LEAYMKQSGL 840 ASLSAEQQAS SASLLGQTGE KAIDEYPVGP EQVNTSNGSC ESSEHKQHCD PL

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MGSKTCMNIL CGTTSSAEWR TGWNLRSGEL ANLCDKCGST FERQIYCEEY HADDSGWREC  60
VTCSKRLHCG CIASLALIEL LDCGGVRCIG CARISDPSLS LNAGKCEGSG PCDVTEKSAG  120
PKQLGNYKEN NWSNQLSIMQ NSNSNLAFGL LKQEELSLPP AQAGTTWISN LAQSSMGSFQ  180
KTRFDVSTSS MQAKDNYGAI THPNLNIALG IPTGNLQATS SAIVDGMEQR KMSDTFHQGF  240
TSPNLLPTPP KLAFSPVPDT NPVVIPQIRV ARPPVEGRGR HQLLPRYWPR ITDQELQQIT  300
GDSNCTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPIKI QDVKGKEWLF  360
QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNSGSVQDA  420
ASPAIRNASL SSESFFPGVI ENLPVMSGCS GLLQSMKGST DAHMNALSRQ LDSSGGNVPW  480
NNSEKCNERT EEVTLTLERK KSRNIGSKSK RLLIDNQDVL ALRLTWEEVQ GMLRPPQSAR  540
PSVVVIEDYE FEEYEEPPVF GKSSIFTARP SGAVEQWAQC DNCSKWRRLP GDILLPPKWT  600
CADNAWDQSR CFCSASEELG PRELENLRHL SKDSAKRRMV MASRMAQEQE SSGLNALASA  660
AVLGDNTNDP GTSSVAATTR HPRHRPGCSC IVCIQPPSGK GKHKSTCTCT VCMTVKRRFK  720
TLMMRKKKRQ SEQEAEIALK NYQKQIPKED VKADVENNDK SHLEDRNKTE DELHVGPTQT  780
NNDGGQNPMS LLAESGKSLD LNFHPEREED LRMRSAPSSL TNLLQLASLP LEAYMKQSGL  840
ASLSAEQQAS SASLLGQTGE KAIDEYPVGP EQVNTSNGSC ESSEHKQHCD PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-70	289	418	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	715	726	KRRFKTLMMRKK
2	715	728	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836213.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X1
Refseq	XP_021836214.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A0K9Q8H6	0.0	A0A0K9Q8H6_SPIOL; Uncharacterized protein
STRING	XP_010683488.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]