PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_208860_dico.t1
Common NameSOVF_208860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 466aa    MW: 51125.7 Da    PI: 6.457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_208860_dico.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012199221123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ Cgk+Fs+   L  H  +H
  Sp_208860_dico.t1 199 YECKTCGKTFSSFQALGGHRASH 221
                        99**********99999998887 PP
2zf-C2H2130.00031317339123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  Sp_208860_dico.t1 317 HECSICGAEFSSGQALGGHMRRH 339
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-8198221No hitNo description
PfamPF139121.4E-12198223IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78199226IPR007087Zinc finger, C2H2
SMARTSM003550.025199221IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-4199221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-8312339No hitNo description
Gene3DG3DSA:3.30.160.605.9E-4315341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.6E-13316341IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679317344IPR007087Zinc finger, C2H2
SMARTSM003550.01317339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDGQDEVINN NNNSDNNENT NNDNNNNNNN NNTDATTTTT NVGAGQLIVK GKRTKRQRPQ  60
SPIPFRMMTA TNTCYKSDEG SDICSNNNNN NNNVVEDMTT ATTITTTTVV SDDDDIYFNG  120
GGTTTEEEED MANCLILLAQ GHSRDLPPQH PPPFLSLVDD HTHKSNNNNN NSVIPPNKFI  180
SRKFMEATST TGKSGYYVYE CKTCGKTFSS FQALGGHRAS HKKPKNKDED YTNKSRSNNN  240
IFSSIITSNK NNYNHNNNSN LLLSSDDEEP PFKVARHNNN NNNNNNNNVI SSTSLSLQLT  300
NRALYSNHHS SNKGRVHECS ICGAEFSSGQ ALGGHMRRHR GPVSAAMGAS SATPVIRAVP  360
LAIEQAPAPT EISHDQIMIT PMKIPPIRNT NTNTNTSVLS LDLDLNLPAP PDDNAGNHQR  420
ESKFVFESKQ HPMDDQSQPP SPTPPPPPPP QQQLVFSSPA LVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835510.10.0zinc finger protein ZAT5-like
TrEMBLA0A0K9Q9V40.0A0A0K9Q9V4_SPIOL; Uncharacterized protein
STRINGXP_010684077.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-30C2H2 family protein