PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_209640_yfqj.t1
Common NameSOVF_209640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18814.8 Da    PI: 9.3955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_209640_yfqj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-161051243
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s r+ tf kR++g+lKK  EL +LC++e++ ii s+ 
  Sp_209640_yfqj.t1 10 YITNDSSRKATFKKRKKGLLKKVDELTTLCGVEACAIICSPY 51
                       699************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.633149IPR002100Transcription factor, MADS-box
CDDcd002662.76E-16285No hitNo description
SuperFamilySSF554554.58E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTRNKVKLEY ITNDSSRKAT FKKRKKGLLK KVDELTTLCG VEACAIICSP YDTYAVAWPS  60
KSGARNVLAR FMSLSHEEQG KKMLDQETYL EQRIVKAEQQ LEKLMKDNRE REITEVMYEC  120
LNGVRSLEGL NLEDTMDLFV VADKTSKMVA KRIENLQKNA GNNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835722.11e-119agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0K9Q8191e-117A0A0K9Q819_SPIOL; Uncharacterized protein
STRINGXP_010674108.12e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-48AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]