PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_209690_axnw.t1

Common Name

SOVF_209690

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 247aa MW: 27227.8 Da PI: 7.9866

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_209690_axnw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100	2.3e-31	2	100	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l Sp_209690_axnw.t1 2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHL 93 6***************************************************************************************** PP DUF260 88 eqlkael 94 +q+ +e+ Sp_209690_axnw.t1 94 CQAGVET 100 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.826	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-26	2	99	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHLCQAGVET ILRGGTLRPI SEFLVGAPPS 120 PIPTSVETDE ISEVFCPPKP NTTTAATNPN PNTWRKQIGV NMMKQDLNGN YNNNKRSRSS 180 PPPPKFKKEE EDYKQLDLSL TPPTFLHAPS QQRPGTPSLN SEESAATTVS FESDNYNYQP 240 KLLNLFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021837602.1	0.0	LOB domain-containing protein 38-like
Swissprot	Q9FN11	2e-77	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0K9Q7W4	0.0	A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRING	XP_010679613.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-74	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]