PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_209830_pdae.t1
Common NameSOVF_209830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Whirly
Protein Properties Length: 71aa    MW: 7923.2 Da    PI: 10.2905
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_209830_pdae.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly673.6e-211971153
             Whirly  1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkq 53
                       s+yk+kaal+v++++p+f  ld g++k++r+G +ll++a+a+++r+ydW++kq
  Sp_209830_pdae.t1 19 SIYKGKAALTVEPKAPEFLPLDLGAFKVSREGYVLLQFAPAAGVRQYDWSRKQ 71
                       7**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.8E-241171IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.26E-221271IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.7E-192071IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MNLWRQCTGG APRVFVGHSI YKGKAALTVE PKAPEFLPLD LGAFKVSREG YVLLQFAPAA  60
GVRQYDWSRK Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-3111713595p24: plant transcriptional regulator PBF-2
1l3a_B3e-3111713595p24: plant transcriptional regulator PBF-2
1l3a_C3e-3111713595p24: plant transcriptional regulator PBF-2
1l3a_D3e-3111713595p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844622.14e-37single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL859e-32WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0K9Q7Z71e-45A0A0K9Q7Z7_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010683246.12e-35(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.29e-32ssDNA-binding transcriptional regulator