PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_210260_rgos.t1
Common NameSOVF_210260
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 902aa    MW: 99153.4 Da    PI: 8.125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_210260_rgos.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.6e-19329429199
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k+l+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  Sp_210260_rgos.t1 329 FEKILSASDASRIGRLVLPKACAEAYfpTINQSEGLPLKIQDIKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-P 418
                        99**************************666667778***************9989999999***9.********************987.9 PP

                        EE..EEEEE-S CS
                 B3  89 efelvvkvfrk 99 
                        +++lv++++++
  Sp_210260_rgos.t1 419 GGKLVIGFRKA 429
                        99999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-20326429IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-29326432IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-23327428No hitNo description
PROSITE profilePS5086311.138329430IPR003340B3 DNA binding domain
SMARTSM010195.1E-23329430IPR003340B3 DNA binding domain
PfamPF023621.9E-16329429IPR003340B3 DNA binding domain
PROSITE profilePS5105014.065594644IPR011124Zinc finger, CW-type
PfamPF074961.1E-11599640IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MGSRICMNTS CGAKTTVQWK KAWQLKSGEI ADLCYNCGSA YEKRVYCDTY HAEETGWREC  60
SLCNKRLHCG CCASVPLIDI QDFGGVWCIS CAKSAVCHSV KRDVISGDAQ NSGKVSNAGD  120
LQNTPLSNKL ETNVISNGNL FSLANIIEPN VSRFLPQSPP DLTNGPFGQI KPEAKTSSIG  180
VAGLGFSKFS HSINGPTLCA PPKEDKPNTG VKDVQESHMP SLNISLRLPS ETSSFGLTFS  240
GGVEEGENSR SPLFQSGQRP RQILPKPPKT NTAKVSDASK SSFSPMRVAR PPAEGRLRNQ  300
LLPRYWPRIT DQELQKLSGD LKTTIVPLFE KILSASDASR IGRLVLPKAC AEAYFPTINQ  360
SEGLPLKIQD IKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPGG  420
KLVIGFRKAS YTHEMQDPQT PSANPNGAAY GESCYPDVPD NLPARNDNFG PQSMGGAKDN  480
QPSVLPEQSN LVNGNTVWGK SEKLKSMVKD DVLEQPKPSS DKKRMRNIGS KSKRFLLHNE  540
DAMELRLTWE EAQDMLRPPP SVNPSIIMVE DFEFEEYSDP PVFGKKTFFT TRLSGGQDQW  600
AQCDNCSKWR KLPTEALLPS KWTCSENFQD SARSSCSSPE VMIPKELDNV IRGSKDSKKR  660
KGAESLEQRG EPSGLDALAT AALGDNEEPS AGATTKHPRH RPGCTCIVCI QPPSGKGKHK  720
PSCVCNVCLT VKRRFKTLMM RKKKRQCERE AEIAQQKSNE QQMKGPQLLK KASGNDVMSS  780
KNHLEKVQAE EGESSSKGHI DLNCHPIREE DATAVDAQSS IGIMALAQAA TTTPLDMYMK  840
PNGLSDLLRK QPMETDSCLL QKACDYADKC LLNKEEGHVS VVKEQEQCKA DGDGSSKKPA  900
LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-673074362131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLMMRKK
2731744KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858196.10.0B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A0K9Q9G10.0A0A0K9Q9G1_SPIOL; Uncharacterized protein
STRINGXP_010685978.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2