PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_211160_rhir.t1
Common NameSOVF_211160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 298aa    MW: 33545.2 Da    PI: 7.5482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_211160_rhir.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.28.7e-08109131123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk F+r  nL+ H+r H
  Sp_211160_rhir.t1 109 HTCQVCGKGFKRDANLRMHMRAH 131
                        79*******************99 PP
2zf-C2H213.30.00025197220123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        ++C+ C+ k+Fs  s+Lk+H++ +
  Sp_211160_rhir.t1 197 FPCNRCKkKRFSVLSDLKSHMKHC 220
                        89*******************987 PP
3zf-C2H215.16.7e-05232253222
                        EET.TTTEEESSHHHHHHHHHH CS
            zf-C2H2   2 kCp.dCgksFsrksnLkrHirt 22 
                        +C+  Cg++Fs+k++L  H+++
  Sp_211160_rhir.t1 232 TCScSCGRMFSNKEELFEHMSL 253
                        69999***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-7104132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.14E-7104131No hitNo description
PROSITE profilePS5015711.905109131IPR007087Zinc finger, C2H2
SMARTSM003557.6E-4109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM0035532159192IPR015880Zinc finger, C2H2-like
SMARTSM0035516197219IPR015880Zinc finger, C2H2-like
SMARTSM0035560231257IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055231259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSDSNNTLHL PLPEYSTTGD PLTNLSAIQH RVDSLSRILS NSVNRNTPLS KNDSNTITAE  60
LTSAIHHVVI NGAALLSSSH VAHHSPQMDS ENPEIVELDA MELTAEYTHT CQVCGKGFKR  120
DANLRMHMRA HGDRFKTLDS LMKPGNLKKS EGFGRETRFS CPYVGCNRNK KHNEFRALKS  180
VVCVKNHFKR SHCPKRFPCN RCKKKRFSVL SDLKSHMKHC TVVAVAVVDE NTCSCSCGRM  240
FSNKEELFEH MSLFEGHMPA NVVVEEVEKC RSGLVEVEVE VEDDQMGLWS SIEELIQF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861068.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT244e-61STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0K9Q7M80.0A0A0K9Q7M8_SPIOL; Uncharacterized protein
STRINGXP_010680535.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.16e-63C2H2 family protein