PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_211180_pzxm.t1
Common NameSOVF_211180
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 239aa    MW: 26705.9 Da    PI: 4.5836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_211180_pzxm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-093272348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia++++ gRt++++k++w+++l
  Sp_211180_pzxm.t1  3 RWSAIANHLP-GRTDNEIKNFWNTHL 27
                       4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.08131IPR017930Myb domain
SuperFamilySSF466899.79E-9236IPR009057Homeodomain-like
PfamPF002491.2E-7327IPR001005SANT/Myb domain
CDDcd001678.06E-8327No hitNo description
Gene3DG3DSA:1.10.10.603.5E-13328IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSRWSAIANH LPGRTDNEIK NFWNTHLKKK LIQMGFDPMT HRPRTDIFSS LPHLIALANL  60
KDLVDNNNNS CWEEQQSIRL QTEVAKLQYL QYLLQPPNNY PMPNLDMDTL NLLNSLPSAF  120
STKDYGDLDS PNPFDGIRDH LPGLKTLETP ANNFVTSDNQ VQDQVCEYTV LSHGENSSTS  180
PWLPSSPSPP PPPVTTIATA TATSAQQLVD CCTTPTTTCT SGFWPDHLLL DDSLFNDIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861070.11e-171transcription factor MYB41-like
TrEMBLA0A0K9Q9P51e-175A0A0K9Q9P5_SPIOL; Uncharacterized protein
STRINGXP_010680536.14e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.16e-34myb domain protein 92