PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_212960_zirp.t1
Common NameSOVF_212960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 246aa    MW: 27653.5 Da    PI: 6.3524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_212960_zirp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-13654247
                       SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                       g+WT  Ed+l+ +a   +G +    +W++Ia +++ gR++ ++++++ ++
  Sp_212960_zirp.t1  6 GKWTRAEDKLFEEALVIFGEEvledRWHKIADHVP-GRSPAEVRDHYEDL 54
                       79*********************************.***********887 PP
2Myb_DNA-binding45.81.4e-14117161347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Sp_212960_zirp.t1 117 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 161
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.922159IPR017930Myb domain
SMARTSM007178.1E-10457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-9655IPR009057Homeodomain-like
SuperFamilySSF466891.79E-11656IPR009057Homeodomain-like
PfamPF002496.0E-12655IPR001005SANT/Myb domain
CDDcd001671.22E-11755No hitNo description
PROSITE profilePS5129419.909110166IPR017930Myb domain
SuperFamilySSF466896.42E-17112166IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-17113165IPR006447Myb domain, plants
SMARTSM007171.0E-11114164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-12114160IPR009057Homeodomain-like
PfamPF002491.5E-12117161IPR001005SANT/Myb domain
CDDcd001672.25E-10117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRGDLGKWTR AEDKLFEEAL VIFGEEVLED RWHKIADHVP GRSPAEVRDH YEDLLFDVDQ  60
IDSGRVELPS YSDEFGASWW GTESPSTRLN QISFGSDGVN SNTKPKQNDV ERKKGTPWTE  120
EEHRLFLIGL EKYGKGDWRS ISRNVVVTRT PTQVASHAQK YYLRQNSGKK ERKRSSIHDI  180
TTVDEKSGVH PAVEQNWIPP PGGNTMEHHH AGFQQMGASA SPSPPFSGNT TQGGSPFGYP  240
SFGFPM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856464.10.0transcription factor DIVARICATA-like
TrEMBLA0A0K9Q7820.0A0A0K9Q782_SPIOL; Uncharacterized protein
STRINGXP_010695074.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-67MYB family protein