PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_213090_mhnw.t1

Common Name

SOVF_213090

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

YABBY

Protein Properties

Length: 171aa MW: 19015.2 Da PI: 8.3442

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_213090_mhnw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	190.8	6.4e-59	1	142	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppv 115 vsvP s++++vtvrCGhC++llsvn+ ++ ++ +++ + +l + + ++ + +s +++ s s+s+ +++ s+++d++ +r p Sp_213090_mhnw.t1 1 VSVPCCSIYNLVTVRCGHCANLLSVNIGVSPPSVPNQEN-SFQLMRQHYSN--YQDVSKDSSTMTGGS-SSSTITTMTSDQHDDQQSRLSP- 87 8**************************9999998887.23332222222..222233333333333.3334444557888888889888. PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl Sp_213090_mhnw.t1 88 IRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 142 9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.1E-58	1	142	IPR006780	YABBY protein
SuperFamily	SSF47095	6.41E-8	87	135	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.8E-5	90	136	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
VSVPCCSIYN LVTVRCGHCA NLLSVNIGVS PPSVPNQENS FQLMRQHYSN YQDVSKDSST 60 MTGGSSSSTI TTMTSDQHDD QQSRLSPIRP PEKRQRVPSA YNKFIKEEIQ RIKASNPEIS 120 HREAFSAAAK NWAHFPHIHF GLNLDLDGQR QARLDQAVAG IEGTNKSHGF Y

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861827.1	1e-127	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	5e-59	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0K9Q773	1e-126	A0A0K9Q773_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685466.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-57	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]