PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_214060_csna.t1
Common NameSOVF_214060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ZF-HD
Protein Properties Length: 212aa    MW: 23749.3 Da    PI: 7.6082
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_214060_csna.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.61.4e-281466258
        ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                       e +rY+eC++NhAa+lG+h+vDGCgEfmps    g+ +alkCa C+CHRnFH+r ve
  Sp_214060_csna.t1 14 EMIRYRECQRNHAAHLGSHVVDGCGEFMPS----GEGEALKCAVCDCHRNFHKRVVE 66
                       5789*************************9....5669****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-251665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-161668IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-241763IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.5171864IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.76E-6165209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-13173212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
PNPNPNPNPN PREEMIRYRE CQRNHAAHLG SHVVDGCGEF MPSGEGEALK CAVCDCHRNF  60
HKRVVEGDPT TAAEAVAGQF LPLPPASTAT ANCYISFSKY HKNDLLQPPV RSNNDNNNNN  120
NFTHPHPHHH PRPPIMMAFG GGRAAAESSS DELNAYRAGN FDYDGEQYGL LAGNNNKKRF  180
RTKFNQEQKD KMVEFAEKIG WKIQKQNNVE VQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861884.11e-127zinc-finger homeodomain protein 6-like
TrEMBLA0A0K9Q7201e-158A0A0K9Q720_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679737.17e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-29homeobox protein 24