PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_214200_huas.t1
Common NameSOVF_214200
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 201aa    MW: 22398.8 Da    PI: 4.9132
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_214200_huas.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-181355347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       ++++ Ede +v+a+k +G++ W+tIar ++ gRt++ +k++w++ 
  Sp_214200_huas.t1 13 PFSPTEDETIVQAHKVHGNK-WATIARLLP-GRTDNAIKNHWNST 55
                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23159IPR009057Homeodomain-like
SuperFamilySSF466897.59E-18159IPR009057Homeodomain-like
PROSITE profilePS5129426.042660IPR017930Myb domain
SMARTSM007171.6E-141058IPR001005SANT/Myb domain
PfamPF002494.2E-151355IPR001005SANT/Myb domain
CDDcd001671.40E-111356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
WCNQLSPDVQ HRPFSPTEDE TIVQAHKVHG NKWATIARLL PGRTDNAIKN HWNSTLRRKR  60
DPQVVVESGE WKRQRVEAVV SAESDSGIVK KEVSSGVVSE QEENGGVEGS DGVETVLTLL  120
PPGGSLMVTR GEDKEGEEED QVWKGVGKSQ GDSEKGNNEM KTWITVMQSM IAEEVKNYMD  180
RLVLQPKNRD GPESDSQAHR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2016149109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859510.11e-144transcription factor MYB56-like
TrEMBLA0A0K9Q7101e-144A0A0K9Q710_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010666145.11e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-30myb domain protein 77