PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_216750_sdgg.t1
Common NameSOVF_216750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 146aa    MW: 16338.5 Da    PI: 7.8388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_216750_sdgg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-13555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT eE+e l  +v+++G g Wk+I +          R+  ++k++w++
  Sp_216750_sdgg.t1  5 KQKWTNEEEEALRAGVAKHGAGKWKLIQKDPEfnqylHSRSNIDLKDKWRN 55
                       79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.018161IPR017930Myb domain
SuperFamilySSF466891.99E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-15456IPR009057Homeodomain-like
SMARTSM007171.3E-8459IPR001005SANT/Myb domain
PfamPF002493.4E-9556IPR001005SANT/Myb domain
CDDcd116602.69E-21656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGNPKQKWTN EEEEALRAGV AKHGAGKWKL IQKDPEFNQY LHSRSNIDLK DKWRNMAAAV  60
QGSREKLRPP RPRPVQDVPA VPSVPLQTPT VVPAPVIHES PADHVKDESG KDLPDAKNGP  120
RYTELIFDAL KDQNAMDISS ILAYIE
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851842.11e-104telomere repeat-binding factor 4-like
SwissprotF4I7L16e-35TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0K9Q6J91e-103A0A0K9Q6J9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010696540.13e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-33MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]