PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0074.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 778aa    MW: 82442.4 Da    PI: 6.8924
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035169193123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C+  +Cg +F++k +L++H  +H
  Sphfalx0000s0074.1.p 169 FRCEvpNCGSTFKQKKHLTHHSLVH 193
                           89*******************8877 PP
2WRKY96.51.8e-30465523259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Sphfalx0000s0074.1.p 465 NDGCQWRKYGQKMAKGNPCPRAYYRCTVAsGCPVRKQVQRCAEDMSILVTTYEGTHNHP 523
                           8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.04E-6161195No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5166194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.009169198IPR007087Zinc finger, C2H2
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.20.25.801.3E-32449525IPR003657WRKY domain
SuperFamilySSF1182901.16E-27457525IPR003657WRKY domain
PROSITE profilePS5081129.574459525IPR003657WRKY domain
SMARTSM007742.6E-37464524IPR003657WRKY domain
PfamPF031061.0E-26465523IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MGEAVMGFVK MGFGSSAAGR VDRVTKIDLS LKLEEEEQDQ NDEEQLVDHY ENPSSGNLHA  60
VIRDAGSPDQ RYQQYSGLRP FHYTNMKMDE EAMSSPGVRA QAAVQSPMMS KNAANDIQGP  120
RPAGGISTFS GAAQEVSAHA AGGVREDVEM EESVQIRNGV FVECRERSFR CEVPNCGSTF  180
KQKKHLTHHS LVHAARRSKD APGSHDRSYT VEDAGSLPPS SPFLSLTASL QMRDEFVAAR  240
AELGRLSEEN KQLRTMLAHV TSEYQNLHLY LLSAMQNQNQ RAGSAPAGAQ SHHPAIASTQ  300
TSHELQLGMS APAAAAAAVE AATAVQAESN PITSAYYGSN LHAMSSSAAS QDDHQKPPLH  360
SFSAHKDRVE EDSAIETKRV EASTHSELQA AAARSHPSSP QDMHTEEEHS RQAHIITETT  420
ADWQPHKMLK TASNAAPALM LETDQSGMRK ARVSVRARSD APTINDGCQW RKYGQKMAKG  480
NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILVTTYEGTH NHPLPPAAAL MASSTSAAAG  540
MFLAGSTSST EFASRMALGG SSAALYHQPS NEVGPAAVGL QQGCNSYNVV PASTNSSMQP  600
TCISASASFP TITLDLTTCH PAAVAAGNFQ QHFTPSTFSQ ATHAQVNTGA AHGSIMQQQT  660
STSCNSSDSQ AFSDSLSAAT TAITLHPRFT EAIAAAISSI ISQSAQAPVP ANYIVAASKP  720
APATTAAATL YSAAAPAPLM GLSTATITRS SRSQSPSQRT KSTPSSPNRS AADTLQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22451527176WRKY transcription factor 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-50WRKY family protein