PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0098.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 326aa    MW: 35374 Da    PI: 5.5928
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05446541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+ +e+ +++  C  ++  lC +C    H        H+++p
  Sphfalx0000s0098.1.p  4 QCDVCERSKATVICCADEAALCTECDKRVHTAnklankHQRIP 46
                          7******99*********************5577888888776 PP
2zf-B_box31.34.1e-105394338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          +++C+ ++ek   +fC d++ llC++C l++H+       H+
  Sphfalx0000s0098.1.p 53 APRCDICQEKSGFFFCVDDRALLCRNCDLSIHSAnslssnHK 94
                          789*****************************6567777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.168147IPR000315B-box-type zinc finger
CDDcd000217.81E-6346No hitNo description
SMARTSM003365.7E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5135198IPR000315B-box-type zinc finger
SMARTSM003367.0E-185198IPR000315B-box-type zinc finger
PfamPF006433.8E-85395IPR000315B-box-type zinc finger
CDDcd000213.81E-105498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKIQCDVCER SKATVICCAD EAALCTECDK RVHTANKLAN KHQRIPFLAP TDAPRCDICQ  60
EKSGFFFCVD DRALLCRNCD LSIHSANSLS SNHKRFLIPG IQVALMAVTV HEVTEAAPQE  120
TPQYGLPSSK MSNPSKIDPV MSVKLSDNAQ PPLSSLPYHS VPESKNQGSF VPKMGEMMGA  180
SRSTEAQRSP ESLSKSSITE FLTDAASGWR VDELLNLADL TEGYSAANLG SSKTNLASFG  240
DFDWTADLSL FEEESFHEVP QLPSPPATSG LYRSTRMAGS IKNSKQDVAL VPDLGDAFVV  300
PDLHLDASPP PSPPHLKQRR SCYDI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401288.11e-101B-box zinc finger protein 24-like
RefseqXP_024401289.11e-101B-box zinc finger protein 24-like
TrEMBLA0A176VIM51e-104A0A176VIM5_MARPO; Uncharacterized protein
TrEMBLA0A2R6WRC21e-104A0A2R6WRC2_MARPO; Uncharacterized protein
STRINGPP1S98_84V6.11e-100(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-50light-regulated zinc finger protein 1