PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0146.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 478aa    MW: 51704.3 Da    PI: 6.7959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-182469147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd  l ++v+++G ++W++I++ ++ gR++k+c++rw + 
  Sphfalx0000s0146.1.p 24 KGPWSPEEDAALQQLVEKHGARNWSLISKGIP-GRSGKSCRLRWCNQ 69
                          79******************************.***********985 PP
2Myb_DNA-binding51.72e-1678120347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+ Ed  +++a+k++G++ W+tIar ++ gRt++ +k++w++ 
  Sphfalx0000s0146.1.p  78 PFTALEDSAIIQAHKLHGNK-WATIARSLP-GRTDNAIKNHWNST 120
                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0661974IPR017930Myb domain
SuperFamilySSF466892.25E-3121117IPR009057Homeodomain-like
SMARTSM007175.0E-172372IPR001005SANT/Myb domain
PfamPF002493.0E-182469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-242577IPR009057Homeodomain-like
CDDcd001678.56E-162668No hitNo description
SMARTSM007171.6E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129419.75775125IPR017930Myb domain
CDDcd001671.26E-1178121No hitNo description
PfamPF002491.6E-1378120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2178124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MALLVSTTKT QQQQQGVEEF DRIKGPWSPE EDAALQQLVE KHGARNWSLI SKGIPGRSGK  60
SCRLRWCNQL SPLVQHRPFT ALEDSAIIQA HKLHGNKWAT IARSLPGRTD NAIKNHWNST  120
LRRRHRISNN EEEEEEIVSA DAGRKRSSNE ISTDGGSLQQ EESSWEVDSH RLNKFGGRFD  180
DDHAQRNKRI SFSGPDDGDA HRLKKLSFGS SDAATSTVSS LLLPSDDDDT HQKLKKPPSN  240
FGSESSTLMR APAVFRPVPR ASAFNTFTPS YVHASSPGVP QSSIERHNET YDDQAETGSD  300
PTTSLSLSLP GTVQSSPPPS EASEQTLEKE PPMSKGSAMM MHSLIDVNNT EACADLMSMA  360
AKSAVAQALA PVVFPAAQGF GPTNWASSSS SSSSVPLRSC YGLDAAVNAA GLLNMMRDMV  420
AKEVQDYMTA AAQSSWSCFP AFHHAIAGHH EHGSSCTSRA QPDFLGAMAT TAPRKAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-36211244107B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00274DAPTransfer from AT2G23290Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-55myb domain protein 70