PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0200.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 426aa    MW: 47577.1 Da    PI: 7.1153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-06262281120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C+ C+k+F+r  nL+ H+
  Sphfalx0000s0200.1.p 262 FSCHVCSKTFNRYNNLQMHM 281
                           89*****************9 PP
2zf-C2H214.20.00013346368123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +C+k+F  + + ++H +++
  Sphfalx0000s0200.1.p 346 FVCRKCSKTFAVRGDWRTHEKNC 368
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-7262284No hitNo description
PfamPF139122.9E-4262281IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4262281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.23262284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658262289IPR007087Zinc finger, C2H2
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SMARTSM00355220309341IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5333366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-7341366No hitNo description
SMARTSM0035543346366IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSWTCDHEQG TSVPVPQSLS SIRHAQPVQA LCEEWWQLQP DTSARWPTHV GAIDPFTDMS  60
LWPSGTTGST RLNSDISTAP DSPSTCTIPR FHTLDHPHTC SCLRHSKIQH FYEKEHRLYN  120
RQRSCESEAG PSPLQRSLPF LSLSPPTADD RRPDVEDLQA QRCYPAARPA AELVPPAPDS  180
NACREYCDDN DVTVALHIGP PSSHDACMEG ATQRDRPSGH LLGDTEFKDS AHITEGVGRL  240
LLSEGQYWIP TSAEILVGPT QFSCHVCSKT FNRYNNLQMH MWGHGSQYRK GPESLRGTQP  300
TAILRLPCYC CALGCRNNIA HPRSKPLKDF RTLQTHYKRK HGIKPFVCRK CSKTFAVRGD  360
WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI RAFGDGHATH GGLDSCEDEN DPAVSEDDAD  420
HDVSG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385058.11e-133zinc finger protein WIP6-like
RefseqXP_024385059.11e-133zinc finger protein WIP6-like
SwissprotQ9SVY11e-106ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1K4711e-132A0A2K1K471_PHYPA; Uncharacterized protein
STRINGPP1S203_59V6.11e-133(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]