PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0307.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 804aa    MW: 85028.4 Da    PI: 4.9117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0307.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09605652455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Sphfalx0000s0307.1.p 605 SHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 652
                           8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17599670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-10599656No hitNo description
Gene3DG3DSA:4.10.280.109.9E-17601668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.701601651IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6605652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10607657IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MAPADLSYSS GQVELLQCPA NVGIPAASSR YSEAVIIAPV VNSSSSTLQG ASFSDGSEHR  60
SLLSGWQALE LQLSARVAEN AASGSTSAAN NSSFAQSDQE VISSSVNGSA SSLQLGRSRS  120
FSASDQQKLL GSTMTSGDWQ QLLDSASNRT SFRSSTSGNL AVPASTGQQQ MLNSSVQAGA  180
GTESLGGPGH SCTSRFVTGD SSLRAAGRAA GRGGGSVGHS AIFDSKLVLS TVACSRSWNS  240
LEQASCGISV EPTKGALALQ GVGLATSHCL EQFSSDPAFA ERAAKYSSFG NAGTYSSSQM  300
ISQPLPFMDS ERSRAAARVG SISRAPQPES EIKISRASSF PTSGVKLNVA ASSSRSHKVE  360
SVINNPLPQD THEAAEQRQD DHAQDPDQVQ PGARSTGDQE LPGAEYSGAG NQLEDEEARI  420
VDTAGATEND NMDHVSKAGQ GTTSREEDFS CTADQEHAAA CRSVESSDDT GNKRKMDIQY  480
SDAGKETNTG YFTDSKVADE SDEDSRPKRY KRLGEESKAA TPLPDQRLDT IKTTSGCFFK  540
QADQRSSSEN SGDSGASPCR GRNDLLTMQK ENVQPMSVSS EPLAASCKLQ DYVHVRARRG  600
QATDSHSLAE RVRREKISER MKYLQDLVPG CSKVTGKAVM LDEIINYVQS LQHQVEVLSM  660
KLASVNPQLD YNLDCIFNKE NANLQMLQSG ASSIVGPEPS STYGLHLPLT PPHIANGLEF  720
QSLGTMDSCH LRRTISAPPT GVPSVPNLDT FGDDATQMSI EWDGELQSML QMGFGQATGA  780
TSSLLLEGFN NCQLPAGHMK VEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212RAAGRAAGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-51bHLH family protein