PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0391.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 970aa    MW: 104789 Da    PI: 5.0051
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0391.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.61e-824468371310
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 
                           lv+lLl+cAea++s+++ela+a+L +l+ ++sp+gdpmqR+a++f+eAL  rl++  s++ ++ +++++++ + +e   +         
  Sphfalx0000s0391.1.p 446 LVHLLLACAEAIHSSHFELARATLRHLRAISSPYGDPMQRIAFHFAEALTDRLNN-NSRIISSSSCTAAATADDAEDHDMKgpprpgrc 533
                           68****************************************************9.77777777777777666555555557999**** PP

                  GRAS  82 ..................................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                                                             ++f++v P+ kf+h+t NqaI+eav+++ r+H++D+d++qGlQWpa+lq+L  Rp
  Sphfalx0000s0391.1.p 534 atttaavasaggaagsccsssswspsvlesemayQAFYQVLPFEKFAHFTGNQAIMEAVASSARIHVLDLDVGQGLQWPAFLQSLVLRP 622
                           ******************************999999***************************************************** PP

                  GRAS 137 egpp.slRiTgvgspesgskeeleetgerLakfAeelgvp..............fefnvlvakrledl.eleeLrvkpgEalaVnlvlq 209
                           +gpp +lR+T+vgs    ++++l++tg+rL++fA++l+++              fe+n++v+++++d  +   ++++++E+l+Vn++  
  Sphfalx0000s0391.1.p 623 GGPPaHLRMTAVGS----DSDSLQQTGRRLKEFARTLQLQqdhqeyhhhrislsFEYNPVVVEKIQDCfHEGLIQLNSDETLVVNCSQV 707
                           88888*********....9***************98764222222222222222******999887661555669999*********** PP

                  GRAS 210 lhrll........................desvsleserdevLklvkslsPkvvvvveqeadh...nse..sFlerflealeyysalfd 269
                           lhrll                        ++s + +++ d++L ++++++Pk+v++ e ead+   n++  +Fl+rf+eal+yy alfd
  Sphfalx0000s0391.1.p 708 LHRLLvdhgttssqkknlkhdheysaaasSSSSAAAEALDNILLMIRNMNPKLVTLLEVEADYyhhNNSsnNFLARFVEALHYYCALFD 796
                           **************************9875555555679*********************775322322459***************** PP

                  GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhe 310
                           +lea+lpres++r+ +E+ +++ +i+++v+ e++  +e+ e
  Sphfalx0000s0391.1.p 797 TLEATLPRESSQRTEIENTVFASQIKQIVSVEEETVEEEDE 837
                           ********************************998666555 PP
2GRAS28.42e-09878967306374
                  GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......................sgslvlgWkdrpLvsvSa 372
                             rh + ++W+  +++aGF+ v+ s++a +qa+ ll  + ++  + +++                      ++ l+lgW++ p++++S+
  Sphfalx0000s0391.1.p 878 PRRHMRSKNWQTHFQKAGFTVVAPSSYAIEQAHQLLDLYMKQ-LQQQQQwlhtscnnyvsmpyklaqdsavQQVLTLGWHETPIIAISS 965
                           47999*********************************9966.44443356667778899999999999999999************** PP

                  GRAS 373 Wr 374
                           W+
  Sphfalx0000s0391.1.p 966 WT 967
                           *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.354420926IPR005202Transcription factor GRAS
PfamPF035143.5E-80446837IPR005202Transcription factor GRAS
PfamPF035147.1E-7878967IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MASSQIHQRV MAPGCNNLLQ QQLPSGAGAG ATALQPRWKQ AGHTASVLDS NACFKQVKEY  60
DHQGVHAEPT SVLDLQTSPG RSCSSLSSSQ QSSLCSSDDS SFPLRTPPGQ HISTVVQEAR  120
CKDESSGNSR AAALVEESRS DDHKPRAGAA QQQQLQPQNH DMETSEFSSW MDCMDDAAAH  180
ADMPANDMDF DANVPDDGMT FEYGTLSCCS FEMSSEENSC FPIFAFFNNP AASLMNICRS  240
STVTTTSSGP PPPHDDQAVL YSNDVGPGNE SLVLIADRHA QQQLVSSSTL INSTTAEGAS  300
SLCGGGGPAS LIPLQEQPAV LQPPPEFMRL LGSQLNDNLS NPRFSQTAYA GGLFEGGAYE  360
TVTHCSEEIS AHAAPTRSSS ICLAGQEEAS IRSAACCWTA AAATRDDHQP AGQKEVQVVL  420
VPQQLQELAP PPAHDTSGAA AAGLQLVHLL LACAEAIHSS HFELARATLR HLRAISSPYG  480
DPMQRIAFHF AEALTDRLNN NSRIISSSSC TAAATADDAE DHDMKGPPRP GRCATTTAAV  540
ASAGGAAGSC CSSSSWSPSV LESEMAYQAF YQVLPFEKFA HFTGNQAIME AVASSARIHV  600
LDLDVGQGLQ WPAFLQSLVL RPGGPPAHLR MTAVGSDSDS LQQTGRRLKE FARTLQLQQD  660
HQEYHHHRIS LSFEYNPVVV EKIQDCFHEG LIQLNSDETL VVNCSQVLHR LLVDHGTTSS  720
QKKNLKHDHE YSAAASSSSS AAAEALDNIL LMIRNMNPKL VTLLEVEADY YHHNNSSNNF  780
LARFVEALHY YCALFDTLEA TLPRESSQRT EIENTVFASQ IKQIVSVEEE TVEEEDEAEA  840
EAEDETVVAA AAAAAAPSST TSSSCCCRGH EPQARPQPRR HMRSKNWQTH FQKAGFTVVA  900
PSSYAIEQAH QLLDLYMKQL QQQQQWLHTS CNNYVSMPYK LAQDSAVQQV LTLGWHETPI  960
IAISSWTVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4545396725378Protein SCARECROW
5b3h_D2e-4545396725378Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-41RGA-like 2