PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0457.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 412aa    MW: 44382.5 Da    PI: 4.9877
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0457.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-18338372135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C+t kTp+WR gp g+ktLCnaCG++y++ +l
  Sphfalx0000s0457.1.p 338 CQHCQTQKTPQWRIGPMGPKTLCNACGVRYKSGRL 372
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.187332368IPR000679Zinc finger, GATA-type
SMARTSM004014.0E-17332382IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15336395No hitNo description
Gene3DG3DSA:3.30.50.106.2E-15337370IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.66E-15337384No hitNo description
PfamPF003205.8E-16338372IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDHHSALIRL PLAGQQLVGL DHQCSLKKQQ KPLVVVVSAD GAAGPSQQPF DVVNFPIDDL  60
LDFSNEDIAG PIGEEAAADH QLQLAAASSF TAVVPSVAKV ETICCLQAAA LASSSSSCSS  120
SVEKGSTELE HLHIDSELPQ LEEEGTAAAA SIEEADLCVP YIEELEELEW ASRLFLEDSF  180
TVSDDSSCRR TWSNDCSSVI SIEERESEIS ALFTTKQRGP GYDKAAASPL SVLDQQTSAT  240
SSELTGSELH SLDFCVPARA RSKRSRNGGK IWMSGILSCT TTTSCDTSAR ISAATSQCSA  300
QQDTVEEGEE WQSFYSQRAK QSRKLSASQQ GGGEVLQCQH CQTQKTPQWR IGPMGPKTLC  360
NACGVRYKSG RLLPEYRPAS SPAYIAHKHS NSHKKILEMR RQRELMGASP A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-42GATA transcription factor 12