PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0522.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 464aa    MW: 51135.8 Da    PI: 6.7636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.2e-49131561128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrk 74 
                           +p+GfrFhPtdeelv +yL+ k+++++     e+ ++i+++d+y++ePwdL++           + ++++++wyfFs++d+ky+tg+r+
  Sphfalx0000s0522.1.p  13 VPVGFRFHPTDEELVAHYLHGKIASTSscnrSEALDIIRDLDLYRLEPWDLHEsckigedeessSWSTKQTDWYFFSHKDRKYPTGNRA 101
                           599********************99998877777789**************85577888776664455888****************** PP

                   NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           nrat++g+Wkatg+dk+++++  ++l+g +ktLvfykgrap+gektdW+mhe+rl
  Sphfalx0000s0522.1.p 102 NRATAAGFWKATGRDKPIHAAkLQQLIGQRKTLVFYKGRAPHGEKTDWIMHEFRL 156
                           *******************9845667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-527180IPR003441NAC domain
PROSITE profilePS5100555.313180IPR003441NAC domain
PfamPF023651.1E-2514156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNKFSSKTSM MQVPVGFRFH PTDEELVAHY LHGKIASTSS CNRSEALDII RDLDLYRLEP  60
WDLHESCKIG EDEESSSWST KQTDWYFFSH KDRKYPTGNR ANRATAAGFW KATGRDKPIH  120
AAKLQQLIGQ RKTLVFYKGR APHGEKTDWI MHEFRLDGNL ADMTTPCEDG SWVVCRVFRK  180
TKNCKPKSDV DTRAGSMEPD QQAGAAMLLL PHQQGGVNSP AAEIQLSMSD GGGGQGAAAA  240
AAGVMCYLPA AYSHQNQQIQ YLCNQEIINQ QQQLADNYSR YHDEMGHEDP AAAAAAFPHL  300
QQLAEIPKFQ AAHHGYSMNS CNPSASSSSS FRSGQHELLQ RQGKKAVDCS STSNSYMPQF  360
GASTGGELVR TADVESIDWM FEGAHGGAAA AAARDQAHLM NMRSIPSTST GTCGTRRDHS  420
LGDVTIHLQV MSRQLSSNVD QHFSSSNGLH HEVDDFWNFT DQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-42918013165NO APICAL MERISTEM PROTEIN
1ut4_B8e-42918013165NO APICAL MERISTEM PROTEIN
1ut7_A8e-42918013165NO APICAL MERISTEM PROTEIN
1ut7_B8e-42918013165NO APICAL MERISTEM PROTEIN
3swm_A8e-42918016168NAC domain-containing protein 19
3swm_B8e-42918016168NAC domain-containing protein 19
3swm_C8e-42918016168NAC domain-containing protein 19
3swm_D8e-42918016168NAC domain-containing protein 19
3swp_A8e-42918016168NAC domain-containing protein 19
3swp_B8e-42918016168NAC domain-containing protein 19
3swp_C8e-42918016168NAC domain-containing protein 19
3swp_D8e-42918016168NAC domain-containing protein 19
3ulx_A8e-4211803168Stress-induced transcription factor NAC1
4dul_A8e-42918013165NAC domain-containing protein 19
4dul_B8e-42918013165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.17e-60NAC 007