PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0603.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 465aa    MW: 51987.1 Da    PI: 6.4669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0603.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.84.2e-76474342374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl.fsev 87 
                           ++lL  cA+a++s++l+++++l++ l++l s +gd++qRlaay ++ L  r++  + s +++ l p + + ++   ++++ + + f+e+
  Sphfalx0000s0603.1.p  47 EQLLNLCATAIASNNLARTKHLMSVLNDLGSLTGDANQRLAAYGLRSLYCRVTCrKDSAVASYLGPLRLQVRRlGPKTVHRTLIkFHEL 135
                           689999**********************************************985777778888666655555245554444448**** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           sP++++ h + Nq++l+ +eg++++H+iD+++sqGlQWp L+++L sR++gpp     g ++    s  + e   +rL kfA  lg+++
  Sphfalx0000s0603.1.p 136 SPWHQLIHTVSNQTLLQVFEGHTHLHVIDIGVSQGLQWPLLIDSLVSRDSGPPPA--AGGEE----SDPSFEDNLNRLVKFAGLLGLNV 218
                           *************************************************998862..45555....899999***************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................desvsles...erdevLklvkslsPkvvvvv 242
                           e ++ +++ le+++ ++L++++gE+la++ +++lhr+                     + +  l++   +rd +L+++ +l+P+v+++ 
  Sphfalx0000s0603.1.p 219 ELSI-LTEPLESVTRQQLQLREGEVLAICAQFRLHRIIederdsgiifapphtsdhatS-R--LRHelsPRDGFLNFLFQLQPHVLILG 303
                           ***9.699********************************************9986642.2..2223358******************* PP

                  GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                           e+++dh s++Fl+rf + ++  +++fdsl+  +  ++ +er+ +E e +gr   n vacega r+er+e   +W +rl++a F+p++l+
  Sphfalx0000s0603.1.p 304 ENDIDHLSHDFLTRFKSVMSPWWKFFDSLHIAFQGQDvDERQILEDE-VGRMMLNNVACEGAVRIERCEPQISWARRLQMASFEPLNLT 391
                           *****************************888877777*********.***************************************** PP

                  GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            ++ + ++lll+k + + + +    ++++l Wk+++ +++S+W+
  Sphfalx0000s0603.1.p 392 AETLEAVHLLLHKSGAH-WGIAVAANCVTLLWKQQATTFCSVWK 434
                           ***************44.6777889******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.91720415IPR005202Transcription factor GRAS
PfamPF035141.5E-7347434IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MMQDAGSTGR RPVRGASSSD ERVNSSARIG EQELRQVPEE DELNWAEQLL NLCATAIASN  60
NLARTKHLMS VLNDLGSLTG DANQRLAAYG LRSLYCRVTC RKDSAVASYL GPLRLQVRRL  120
GPKTVHRTLI KFHELSPWHQ LIHTVSNQTL LQVFEGHTHL HVIDIGVSQG LQWPLLIDSL  180
VSRDSGPPPA AGGEESDPSF EDNLNRLVKF AGLLGLNVEL SILTEPLESV TRQQLQLREG  240
EVLAICAQFR LHRIIEDERD SGIIFAPPHT SDHATSRLRH ELSPRDGFLN FLFQLQPHVL  300
ILGENDIDHL SHDFLTRFKS VMSPWWKFFD SLHIAFQGQD VDERQILEDE VGRMMLNNVA  360
CEGAVRIERC EPQISWARRL QMASFEPLNL TAETLEAVHL LLHKSGAHWG IAVAANCVTL  420
LWKQQATTFC SVWKSHTSQQ HGDASLLLIC SQAQSAPPMF SLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-344443485473Protein SHORT-ROOT
5b3h_B2e-344443431419Protein SHORT-ROOT
5b3h_E2e-344443431419Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369073.11e-130nodulation-signaling pathway 1 protein-like
TrEMBLA0A2K1L0V11e-129A0A2K1L0V1_PHYPA; Uncharacterized protein
TrEMBLA9SJ761e-132A9SJ76_PHYPA; Predicted protein
STRINGPP1S84_112V6.11e-130(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-52GRAS family protein