PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0668.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 408aa    MW: 44935.9 Da    PI: 4.4844
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0668.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1890143356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0000s0668.1.p  90 KKRRLTFDQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 143
                           45578999*********************************************9 PP
2HD-ZIP_I/II118.34.2e-3889181193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L   y+++k+e e++  e+e+L++
  Sphfalx0000s0668.1.p  89 EKKRRLTFDQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSLDYNRMKAEYETVVLEKEKLKT 177
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elke 93 
                           e++e
  Sphfalx0000s0668.1.p 178 EIQE 181
                           9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-1981147IPR009057Homeodomain-like
PROSITE profilePS5007117.57285145IPR001356Homeobox domain
SMARTSM003892.7E-1488149IPR001356Homeobox domain
PfamPF000462.1E-1590143IPR001356Homeobox domain
CDDcd000867.04E-1690146No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1992152IPR009057Homeodomain-like
PRINTSPR000318.2E-6116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000318.2E-6125141IPR000047Helix-turn-helix motif
PfamPF021832.1E-13145187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MATTMRGFGA QNVMSLMQSE STPDSLVAML ASCNPIGLQV PHSGGGLEDA VVGCGQKRPF  60
YPSFVDGSLG GEEAGVDDDG VDDCSPSVEK KRRLTFDQVR SLERNFELEN KLEPERKMQL  120
AKELGLQPRQ VAVWFQNRRA RWKTKQLERD YEVLSLDYNR MKAEYETVVL EKEKLKTEIQ  180
ELSGKTQAEF RGCVDAHVDT NQSRLSPGGP RAAADSVSVK AEMISELVTQ QTTSEPAAAQ  240
WKQQQLPAST PITVDIISSA KSKESKEQST TSSGSNNSSE ILDTDSPRAI DNYRLSLCNQ  300
ATVTREKEDD EEEEQRQLHQ GLTNCSQFIS ESFGGDPSLL HVVADDLCCS AAVGGARISS  360
PAQMFQRVAI KLEADGSSNS CYQDDQSCNY FLSQMDDKAA MPWWDWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-40homeobox 1