PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0065.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 433aa    MW: 48163.4 Da    PI: 10.1305
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.4e-09227286155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGV  + ++++W+A+I+   + ++    k   + +lg++ t+ eAa  ++  ++kl++
  Sphfalx0001s0065.1.p 227 SCYKGVGKHVNSKQWEARIWAgDV-DQlkrqKGrGQLYLGSYPTEIEAATVHDLVALKLKK 286
                           79*******************443.445454337**********99***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-8227294IPR016177DNA-binding domain
SMARTSM003804.1E-5228300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-8228295IPR001471AP2/ERF domain
PROSITE profilePS5103213.617228294IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-6329394IPR016177DNA-binding domain
PROSITE profilePS5103213.09330394IPR001471AP2/ERF domain
SMARTSM003806.3E-8330400IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-8330394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVSLRRFRFS RESTTSSCGT SHEPDPFQAS RHEPKTEHHV KEDAGLTPAL HSVLITDPGV  60
LTVYTQPPNM THTTLGLRRN AAIFHMDLNI IPHVPVPESV VAVREVNRNE DHKQLQSSPA  120
AACQPAELPA ASPQGQTSKF GGPTSTKKSR QASGNSSLKC SRCLALQASN SEIIAGSSPP  180
CKKSTMQGSK VDVRNLGHNT AKVTSPNSRK RKKPNSSILT TMERMTSCYK GVGKHVNSKQ  240
WEARIWAGDV DQLKRQKGRG QLYLGSYPTE IEAATVHDLV ALKLKKKNYT LNFEECTYAS  300
ELPKMESLSE RDYIWSFRRK AQRFTRGKSV YKGVSRQSGG GTKWEGRVGY KHEDTGKRID  360
VYLGVHPTEV EAARAVDMAS LHYRGWDDAV TNFAPSQYNK EAVEEHLQRV EKKRYSIPAA  420
LLHYWSQFQA SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-31AP2 family protein