PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0077.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 430aa    MW: 46562.1 Da    PI: 4.3955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17102155356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t eq++ Le+ Fe ++++  e++ +L+k+lgL+ rqV vWFqNrRa++k
  Sphfalx0001s0077.1.p 102 KKRRLTFEQVRSLERNFELENKLEPERKMQLSKELGLQPRQVAVWFQNRRARWK 155
                           4557899**********************************************9 PP
2HD-ZIP_I/II119.41.9e-38101193193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqv++LE++Fe e+kLeperK++l++eLglqprqvavWFqnrRAR+ktkqlE+dye+L  ay++lk+e e++ +e+++L+ 
  Sphfalx0001s0077.1.p 101 EKKRRLTFEQVRSLERNFELENKLEPERKMQLSKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSVAYNRLKTEFEAIVQEKDRLKC 189
                           69*************************************************************************************99 PP

           HD-ZIP_I/II  90 elke 93 
                           e+++
  Sphfalx0001s0077.1.p 190 EVHR 193
                           8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-1980158IPR009057Homeodomain-like
SuperFamilySSF466893.08E-1991159IPR009057Homeodomain-like
PROSITE profilePS5007117.11997157IPR001356Homeobox domain
SMARTSM003898.0E-14100161IPR001356Homeobox domain
PfamPF000465.9E-15102155IPR001356Homeobox domain
CDDcd000861.03E-16102158No hitNo description
PRINTSPR000314.8E-5128137IPR000047Helix-turn-helix motif
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PRINTSPR000314.8E-5137153IPR000047Helix-turn-helix motif
PfamPF021833.8E-13157197IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTATSAMRSG FGTAQSAGTL MGGKETTSSD SLVAILASCS NMGGIQVGGG LGDHMMTVVG  60
CGDKRPFSSY PGASTFAGSP GEADQGGDED GGGDFSLHNV EKKRRLTFEQ VRSLERNFEL  120
ENKLEPERKM QLSKELGLQP RQVAVWFQNR RARWKTKQLE RDYEVLSVAY NRLKTEFEAI  180
VQEKDRLKCE VHRLSVKTEL PACDGVQEPS SVSESEITTT THTSDNAQVN SSVTTVKTES  240
AVIISEDQQE QHQLVENTTT RDSSQSTRLS PTVAADGSTQ KVVDQEPEQS TSADSNSSDI  300
LNVTDSPRTV NNCTTTHPPS SSVLVIPTLD QQQQLQTATN NELVAQAESA SFVVDSSLLD  360
GVEDDDLCGA AGHVMLSPQA VYQRPPMSIK LEDDCSNSSY PTAADDHSCI YFLSQLDDKT  420
GATPWWDWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-40homeobox 1