PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0078.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 564aa    MW: 61419.9 Da    PI: 9.0248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0078.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16453148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                          r+rW +eEd  l ++vkq+G+++W++++++mg  + R +k+c++rw +yl
  Sphfalx0001s0078.2.p  4 RQRWQAEEDNVLREYVKQYGPRDWHLVSERMGttLDRDAKSCVERWKNYL 53
                          89**********************************************97 PP
2Myb_DNA-binding35.72e-1159103147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g+ T+eE++l + + +++G++ Wk+Ia++++ gRt+k +  +w  y
  Sphfalx0001s0078.2.p  59 KGSLTEEEQQLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEAY 103
                           6788******************.*********.*****999888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.214153IPR017930Myb domain
SMARTSM007177.0E-14355IPR001005SANT/Myb domain
SuperFamilySSF466892.59E-21498IPR009057Homeodomain-like
CDDcd001671.14E-11653No hitNo description
Gene3DG3DSA:1.10.10.603.0E-20660IPR009057Homeodomain-like
PfamPF139217.0E-16769No hitNo description
PROSITE profilePS5129424.52254108IPR017930Myb domain
SMARTSM007178.6E-1158106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-1661106IPR009057Homeodomain-like
CDDcd001673.19E-863103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MKERQRWQAE EDNVLREYVK QYGPRDWHLV SERMGTTLDR DAKSCVERWK NYLKPDIKKG  60
SLTEEEQQLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EAYKDKQQKE KEKDRPRFAA  120
SGSTGETSNY SEMLATLADK FGQQQQQQGS TMLPHPTFPT ASLLGPPPVV PLALLGPSMA  180
GGTANPTSVG ILIPKLPSFE MLPSHPLVTV AFPVPVMTTA IGSWLSTAIT VPQCASLSTA  240
TAEPAVEIIP VRVSSSRASD GHPAAIVAAR TTQGPTVTVV SEAAKATSQP AATSAGTSAL  300
PPWMSIVPSS AAQTPAVGSD CKIFATTPTL PLTLLGPSSS ASREVPSSTS GDIATSSIPP  360
PDPTSTVLAQ RAWLQATMSR MEAGPSARDI PSPGVGVSTQ ALWAAANLQQ TRQVGPSAVP  420
MPVPEMALSA SHWVQLLQFC KELEDRHQYW FAQKKESSWR LKRLEAKLEA EKMQQRKQKM  480
EDVNASIATL RKEESQFLEG LEADYKEKIL SLHREEERKD AKLVEMWTAK HMQLSQFLQQ  540
MLHEAPPSAP SQTHSGPGPS EQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-16710210102B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235251.14e-62phantastica transcription factor b
RefseqXP_006576134.14e-62phantastica transcription factor b isoform X1
RefseqXP_017249788.14e-62PREDICTED: transcription factor AS1-like
RefseqXP_017249789.14e-62PREDICTED: transcription factor AS1-like
RefseqXP_017249790.14e-62PREDICTED: transcription factor AS1-like
RefseqXP_028224802.14e-62transcription factor AS1-like
STRINGGLYMA03G19030.11e-61(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.15e-55MYB family protein