PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0159.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 456aa    MW: 49166 Da    PI: 4.4766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-1997147155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r  r +lg++ taeeAa a+++a++ l+g
  Sphfalx0001s0159.1.p  97 CSYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYATAEEAALAYDEAARVLYG 147
                           67*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1397147IPR001471AP2/ERF domain
CDDcd000188.01E-3097156No hitNo description
SMARTSM003801.6E-3498161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3098156IPR001471AP2/ERF domain
PROSITE profilePS5103221.85298155IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2198156IPR016177DNA-binding domain
PRINTSPR003674.5E-1099110IPR001471AP2/ERF domain
PRINTSPR003674.5E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MQHGNSVAET LAWWADRNQT LNQGLSSPTI AQPPVSSQVQ QQLRNLRMMH GGGESGGDLT  60
ADYTFNHGPR KNIRKPPAKG SKKGCMKGKG GPENAKCSYR GVRQRTWGKW VAEIREPNRG  120
SRLWLGTYAT AEEAALAYDE AARVLYGSCA LLNLPDGLPG AAAVAAGGGA AGSSAEASTS  180
SMCPSTLPGD QFPQDVKRLQ ELKETTENLS SNSAASATTR DSTANFDTAN SETLSQKNNV  240
VVEEADVIPR PSPPTWTMMS SNLHPQSQEA DVEEQIQQQQ LQSQGRNLEE SLQQHDLAES  300
DDLFDNLDFL DTKFDGAEML PQLLARSNSN SSTMTNTSTY SSDLWGNLAS HINISDGTMD  360
SDASNESMPT APAPSRKGGM DFQDESKVQF VDVKDAADSI GDLERPGSPD VEMLETSPLM  420
NKKHAWTSLL QSPASANSQQ GEWPEMLQPS WLQSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1899155360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-21ERF family protein