PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0239.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 688aa    MW: 73573.4 Da    PI: 6.6449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0239.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT++Ed++lvd+++ +G g+W++ ++  g+ R++k+c++rw +yl
  Sphfalx0001s0239.1.p 14 KGPWTPDEDQKLVDYIASYGHGSWRALPKQAGLLRCGKSCRLRWTNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding55.61.2e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rgr++ eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Sphfalx0001s0239.1.p  67 RGRFSLEEEQMIIHLHAILGNR-WSAIAAHLP-GRTDNEIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.883961IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001679.90E-111661No hitNo description
PROSITE profilePS5129426.80762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2765116IPR009057Homeodomain-like
SMARTSM007178.2E-1866114IPR001005SANT/Myb domain
PfamPF002495.1E-1667112IPR001005SANT/Myb domain
CDDcd001675.32E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MGRAPCCDKI GLKKGPWTPD EDQKLVDYIA SYGHGSWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGRF SLEEEQMIIH LHAILGNRWS AIAAHLPGRT DNEIKNYWNT HLKKRLMQMG  120
IDPVSHHHTT STDDQSSLEH LAARDVVQSQ CTTSPDIIVS KPLISSKLSH MLQWDSARLE  180
AEARLANESA SQLKCSQLGA KVDLISNSSS SLDHIPNTLL AHLVSSSDAL MRSWKNQQVA  240
HEESLLQQDL GPGMVNLVEL EKGGAVVPAA VAGPDLLLGS SQDLHHVDNS SCFQKSLLQE  300
WESMHATPGP TGLKIYDSLA MHAGLAATDS PVFNQAAERR SPAAGLQMFQ SLPEAAAAAA  360
ETAETASDQF QQLPLEQQCP LSNLSTSSLT QYADLVDHQQ HMISPTSTLC SLDHQGLSSA  420
SISSSTSPAA ANSVELLHAG SYLQKPAAAD HSFILNMMQL LKNSVQSSSA GSLEISCNQS  480
CSGTTTTGLV QHGPPTTSSS PMFSSSSASS QSPPSPWQQQ QQSLNHDHKK VEESIKLHLN  540
AASPGISASS LISAETQEKQ QQLNLISRSS LSPQITSSSS SIISHSCSSS AAAAAAISQI  600
PAAPSELLLM DHIPGQSSYT NMSRPSSCVS QSKSSSATTV GGTWSQHGSS MESKEYWTNM  660
LQLVGPPASC CNQILTCATT VPTITNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-76myb domain protein 16