PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0334.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB

Protein Properties

Length: 2651aa MW: 287862 Da PI: 6.5037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0334.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.4e-07	997	1039	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++W +eE ++++d ++ + ++ +++Ia ++ ++t +c+++++ Sphfalx0001s0334.1.p 997 NPWLPEEKKIFIDKFAIYNKN-FSKIAVHLE-HKTTADCVEFYYR 1039 58**************988.*****.********985 PP
2	Myb_DNA-binding	26.1	2.1e-08	1245	1287	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E l+ dav ++G++ ++ Ia ++g +++ qck ++ k Sphfalx0001s0334.1.p 1245 QWTDSERHLFTDAVVLYGKD-FENIALHVG-SKSESQCKAFFSKT 1287 5***************99.*****.******999876 PP
3	Myb_DNA-binding	30.7	7.4e-10	1609	1650	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E +++++ ++++G++ W++ ++++ ++l q+k ++q+ Sphfalx0001s0334.1.p 1609 SWTQDEKDKFAEIIRKHGKD-WTRLHECLP-AKSLTQIKTYFQN 1650 7***************99.*****.9*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-5	993	1044	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.93E-11	993	1045	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.692	994	1045	IPR017884	SANT domain
SMART	SM00717	1.6E-8	995	1043	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	16.429	1241	1292	IPR017884	SANT domain
SMART	SM00717	9.3E-7	1242	1290	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-9	1244	1293	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-4	1245	1289	IPR009057	Homeodomain-like
Pfam	PF00249	9.2E-7	1245	1286	IPR001005	SANT/Myb domain
CDD	cd00167	9.70E-6	1246	1284	No hit	No description
SuperFamily	SSF46689	3.44E-10	1602	1654	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-6	1602	1651	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.787	1605	1656	IPR017884	SANT domain
SMART	SM00717	7.8E-8	1606	1654	IPR001005	SANT/Myb domain
CDD	cd00167	3.98E-6	1609	1652	No hit	No description
Pfam	PF00249	4.6E-8	1609	1650	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2651 aa Download sequence Send to blast
MYSPSRGDAR ATAAPNARDL SSSMPIDHVP TWQREPYSSS SSRDVRLDRG DRSDRGIAGK 60 RDWNNSSDRT TSSSSAAANV PFQRSLGLHH PANNGISLGP PNKRRTQGRH NSFYTEIGRY 120 SAAASREGDT APVFGGAAIQ PLENGLGRKY DRDSFYLGTG APPPLSPSVN GALGVVGQWH 180 SSSSRESELS TTDGRDTGSS GTTTTGQNGR PYQSQALADA ENLSWDRERS AGAVSGWDWS 240 LKSEREQQQH RERLHSKPDL YSRRFEVPPP SQFDSGRGAW SAGDTELEGS RLDRYGSGNR 300 ESFSLDVVSG SRESSSHGSH DWRSRGERSA SGIVPRGSPF ISSNGSLKDS VVRGHGLEVA 360 GGGLSSPQPS PHSAIPSGCH DRGHGRSHHS PPKRLRLGWG QGLAKYEKKK VGDVDESSLI 420 SSGVGTTTAS VALPVAASGT DNPPPPSSEQ TVVKETALSA VAKSPPQSTH EPSPPPPIQP 480 VDSTPEVFVE QDVIRKQKHD FGVAEAEGAA PICGTETEKG TEEVLVQADN SCGLLEVPPP 540 DQADLSKAAG ILVSTINAES KDSSPVDVST TCEQPVTEGP VLIATETLPD EGEVAGWTKD 600 SIIQRVEKVE FEIDQIEKEI ARLEAESNVE ILQDLPGNVL PVEAGGKENQ FMAPEDVNST 660 VDIMETSPTL RLHPSPASPC SPAAEDVCQN SVNDREVAFV EMMPDVLDME VEEKAVGLEH 720 ETGDVAAPLE ERVEKKDVGE DQQGEGLCVQ SPLSPASGTE MQDGPLQVSM EEVVNMTQLE 780 VDNKQELSTM VLVEDLQNFT HSLIMENKKQ SRCASDSLVH LLTKELVQEG KGQLYSTPAE 840 SPMWHKNVES HRMNLDRIVE KLTEQQNCLK FKERVLTMRF RTLKDAWRQE QLRLVQRRYR 900 AKPIRRWEIE RRNGTAPPSQ RSSLRLRSIQ SGLGRADEEL HAMKKLMCEP SVEQLRSVQK 960 MPAMILDDKE RMFRRFINTN ALVEDPVLLE LERKNANPWL PEEKKIFIDK FAIYNKNFSK 1020 IAVHLEHKTT ADCVEFYYRN HKSEDFEKIR RRHQLKKRRD YTQASASYLA TTAPGSSRHR 1080 DSNVARVEAL NKAAAAAAVA AVSGITTGTK AVRSSIHNRV VDRTRVSMPA VHPASLLSVL 1140 DNINKTTSMK DNKAATSNVS SVTAAVPAVP DKSATFTTPC GLSSATPPVA KNFRERNPSK 1200 NLSVAGPSMI RSFQLEQQTI GPKGARSIHL RQESSKSAVD EMDAQWTDSE RHLFTDAVVL 1260 YGKDFENIAL HVGSKSESQC KAFFSKTRKR LGLDHLVEQY QAGLDGTAET AMLLQGLDLT 1320 QGHSEGTKVV VTEEDAKACL SNSKSAASSI KGETTEGLTV EVKTPKPESV DEESAGTADK 1380 PVSKTDEGLA ETVGEHSVHE SMEDMALLTV MVEDASKVAA QAIVIGEAVV LEESSTTKPE 1440 ASTSTSIITG CTLLEPTDQA VKVEQCEEVC ATQSIARVPG FATSGIPNEE RDSESTKIDV 1500 LQPLSVMDGE TMMEQAAATL EKCTEMLAEC QEPKGNQNID VKPEPGSPQV ATSANTDSSC 1560 LPPLALSAAQ STSVVLSTTV PIHSAQQFKE KLVRAGAAGD AKPRREPTSW TQDEKDKFAE 1620 IIRKHGKDWT RLHECLPAKS LTQIKTYFQN SKAKLGLVPS DGAVNSAGRG IGSRKRKADD 1680 SDTSSNNVGS VVAPINQHKA GSLLPPDVEI ASQKMNPVMV PLPSMGTNAA SADHLTYPRL 1740 GGQQMGQAID QDSMSIQKLI QQMCSANGFP PNTPSSIFPF LHHSGLPIFP ASGLQRAQNL 1800 QHLATSASQK QPLQSMIHQK LPSQSTGLVQ QTNPPVLHQQ AVHQQMQQTA QVVARNQQQL 1860 LQNQVVSMMQ QAALRQQQQQ QQKSSQVAVH PLQQQVVGLQ QQQQQQLLVN QHVVHHQQPQ 1920 ATSQQQQQVG VNLAQQVSTQ GQQENNPPQQ VVGQQQQHLH HQQQKALLQQ QQMQQAVQQY 1980 HQHQQLQQQQ QQQQQQDQAL AQVQAHMQAQ VLAIAQAQAQ AQAQAHVQAQ AQAAAAQVHA 2040 HVQEHEQASQ HPPLTQPPRK PLTKIALQQQ QQQQQKPLTK TVLQQQQQGA GLHHHHDQQQ 2100 HGQSLGLLRG SIQALTPSSV TELSNQQVDM VELREAKLRH LCPEELQNQL SAVVQQASSA 2160 QQQQAVQPAR PSPSSTVDAP QQIRPGDIKL FGQSLLSQPS LNVGPQSALH QAASSANERG 2220 ALHQPFYPTL SAPSSTVTKP SGAPSAFGRV QAPFMLPEGR QASWPTLGSH SGNMGLWSMM 2280 NGLQGAATSL TKSSEREARS QHAMQETMPH KNDCFAQDSR ELEGEQAMGA LPLHLKHLEQ 2340 LCSIQELRRN EGLAKMVPVS DQRGGGGAGP SVVIGVSDAN QDSRIDTDKR CDHSQGLSSS 2400 TGQIDCYRRG DLSQGLSGAN QIDGEGRKEL SQGLNGANQI DDERRNELSQ GGLSDPLMGS 2460 SNRATSESTG MQGVPSATSN QQMPRTVMDA LIAINDWHNS RSLPGHAPSG SVPQQSLEQQ 2520 VWENFFRRES NNNGGSESVK TNPVFGLPAS LATTAHLSGP EVLQQCVRDS SMYFTPQHML 2580 SLAGQRVNNA GAWNNGNRLM HTTESQLQMP MLPTITPFHS CPLSRGTTAT DEHLRPVDSR 2640 GPDSTTGGVS *

Sequence ? help Back to Top

Protein Sequence Length: 2651 aa Download sequence Send to blast

MYSPSRGDAR ATAAPNARDL SSSMPIDHVP TWQREPYSSS SSRDVRLDRG DRSDRGIAGK  60
RDWNNSSDRT TSSSSAAANV PFQRSLGLHH PANNGISLGP PNKRRTQGRH NSFYTEIGRY  120
SAAASREGDT APVFGGAAIQ PLENGLGRKY DRDSFYLGTG APPPLSPSVN GALGVVGQWH  180
SSSSRESELS TTDGRDTGSS GTTTTGQNGR PYQSQALADA ENLSWDRERS AGAVSGWDWS  240
LKSEREQQQH RERLHSKPDL YSRRFEVPPP SQFDSGRGAW SAGDTELEGS RLDRYGSGNR  300
ESFSLDVVSG SRESSSHGSH DWRSRGERSA SGIVPRGSPF ISSNGSLKDS VVRGHGLEVA  360
GGGLSSPQPS PHSAIPSGCH DRGHGRSHHS PPKRLRLGWG QGLAKYEKKK VGDVDESSLI  420
SSGVGTTTAS VALPVAASGT DNPPPPSSEQ TVVKETALSA VAKSPPQSTH EPSPPPPIQP  480
VDSTPEVFVE QDVIRKQKHD FGVAEAEGAA PICGTETEKG TEEVLVQADN SCGLLEVPPP  540
DQADLSKAAG ILVSTINAES KDSSPVDVST TCEQPVTEGP VLIATETLPD EGEVAGWTKD  600
SIIQRVEKVE FEIDQIEKEI ARLEAESNVE ILQDLPGNVL PVEAGGKENQ FMAPEDVNST  660
VDIMETSPTL RLHPSPASPC SPAAEDVCQN SVNDREVAFV EMMPDVLDME VEEKAVGLEH  720
ETGDVAAPLE ERVEKKDVGE DQQGEGLCVQ SPLSPASGTE MQDGPLQVSM EEVVNMTQLE  780
VDNKQELSTM VLVEDLQNFT HSLIMENKKQ SRCASDSLVH LLTKELVQEG KGQLYSTPAE  840
SPMWHKNVES HRMNLDRIVE KLTEQQNCLK FKERVLTMRF RTLKDAWRQE QLRLVQRRYR  900
AKPIRRWEIE RRNGTAPPSQ RSSLRLRSIQ SGLGRADEEL HAMKKLMCEP SVEQLRSVQK  960
MPAMILDDKE RMFRRFINTN ALVEDPVLLE LERKNANPWL PEEKKIFIDK FAIYNKNFSK  1020
IAVHLEHKTT ADCVEFYYRN HKSEDFEKIR RRHQLKKRRD YTQASASYLA TTAPGSSRHR  1080
DSNVARVEAL NKAAAAAAVA AVSGITTGTK AVRSSIHNRV VDRTRVSMPA VHPASLLSVL  1140
DNINKTTSMK DNKAATSNVS SVTAAVPAVP DKSATFTTPC GLSSATPPVA KNFRERNPSK  1200
NLSVAGPSMI RSFQLEQQTI GPKGARSIHL RQESSKSAVD EMDAQWTDSE RHLFTDAVVL  1260
YGKDFENIAL HVGSKSESQC KAFFSKTRKR LGLDHLVEQY QAGLDGTAET AMLLQGLDLT  1320
QGHSEGTKVV VTEEDAKACL SNSKSAASSI KGETTEGLTV EVKTPKPESV DEESAGTADK  1380
PVSKTDEGLA ETVGEHSVHE SMEDMALLTV MVEDASKVAA QAIVIGEAVV LEESSTTKPE  1440
ASTSTSIITG CTLLEPTDQA VKVEQCEEVC ATQSIARVPG FATSGIPNEE RDSESTKIDV  1500
LQPLSVMDGE TMMEQAAATL EKCTEMLAEC QEPKGNQNID VKPEPGSPQV ATSANTDSSC  1560
LPPLALSAAQ STSVVLSTTV PIHSAQQFKE KLVRAGAAGD AKPRREPTSW TQDEKDKFAE  1620
IIRKHGKDWT RLHECLPAKS LTQIKTYFQN SKAKLGLVPS DGAVNSAGRG IGSRKRKADD  1680
SDTSSNNVGS VVAPINQHKA GSLLPPDVEI ASQKMNPVMV PLPSMGTNAA SADHLTYPRL  1740
GGQQMGQAID QDSMSIQKLI QQMCSANGFP PNTPSSIFPF LHHSGLPIFP ASGLQRAQNL  1800
QHLATSASQK QPLQSMIHQK LPSQSTGLVQ QTNPPVLHQQ AVHQQMQQTA QVVARNQQQL  1860
LQNQVVSMMQ QAALRQQQQQ QQKSSQVAVH PLQQQVVGLQ QQQQQQLLVN QHVVHHQQPQ  1920
ATSQQQQQVG VNLAQQVSTQ GQQENNPPQQ VVGQQQQHLH HQQQKALLQQ QQMQQAVQQY  1980
HQHQQLQQQQ QQQQQQDQAL AQVQAHMQAQ VLAIAQAQAQ AQAQAHVQAQ AQAAAAQVHA  2040
HVQEHEQASQ HPPLTQPPRK PLTKIALQQQ QQQQQKPLTK TVLQQQQQGA GLHHHHDQQQ  2100
HGQSLGLLRG SIQALTPSSV TELSNQQVDM VELREAKLRH LCPEELQNQL SAVVQQASSA  2160
QQQQAVQPAR PSPSSTVDAP QQIRPGDIKL FGQSLLSQPS LNVGPQSALH QAASSANERG  2220
ALHQPFYPTL SAPSSTVTKP SGAPSAFGRV QAPFMLPEGR QASWPTLGSH SGNMGLWSMM  2280
NGLQGAATSL TKSSEREARS QHAMQETMPH KNDCFAQDSR ELEGEQAMGA LPLHLKHLEQ  2340
LCSIQELRRN EGLAKMVPVS DQRGGGGAGP SVVIGVSDAN QDSRIDTDKR CDHSQGLSSS  2400
TGQIDCYRRG DLSQGLSGAN QIDGEGRKEL SQGLNGANQI DDERRNELSQ GGLSDPLMGS  2460
SNRATSESTG MQGVPSATSN QQMPRTVMDA LIAINDWHNS RSLPGHAPSG SVPQQSLEQQ  2520
VWENFFRRES NNNGGSESVK TNPVFGLPAS LATTAHLSGP EVLQQCVRDS SMYFTPQHML  2580
SLAGQRVNNA GAWNNGNRLM HTTESQLQMP MLPTITPFHS CPLSRGTTAT DEHLRPVDSR  2640
GPDSTTGGVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-14	955	1047	3	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-14	955	1047	3	94	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-36	MYB family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0334.1.p