PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0374.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 552aa    MW: 60754.4 Da    PI: 5.9549
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0374.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix446e-14421517286
              trihelix   2 WtkqevlaLiearremeerlrrgklk..kplWeevskkm..rergferspkqCkekwenlnkrykkike.......gekkrt.sessst 78 
                           Wt++ev aL+++r em++++ r+k+k   + W +  ++m  + rgf+++++ Ck+k + l ++ykk +e       +e ++t  ++s++
  Sphfalx0001s0374.1.p 421 WTNSEVEALVALRGEMHDEFVRNKQKqgVNTWNKLHIRMqaMCRGFHKTANACKKKYSILYNEYKKDREclkengdIEASGTpGTRSKK 509
                           ********************9976553389*********999***********************988622212114555653467899 PP

              trihelix  79 cpyfdqle 86 
                           c+yfdq++
  Sphfalx0001s0374.1.p 510 CAYFDQMD 517
                           ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546952.56E-1754162IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.106.9E-2055163No hitNo description
PfamPF006517.4E-2057162IPR000210BTB/POZ domain
SMARTSM002255.1E-1566163IPR000210BTB/POZ domain
PROSITE profilePS5009715.20466131IPR000210BTB/POZ domain
PfamPF138373.7E-11419517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MTMPTQEATT SVHLLNKKRS TRISAASSDS VQSLKAQVKR LEKQREFLTL WKADVLNGFN  60
LEASYVDVKL QACDGTPVFA HKAVLAARSE EFDAIFQADT NAKEIEIPEM AGEELKAFVS  120
FFYTGSLPIN VIAEYMTTFL HVAEKYKVHY LAAVCEDVLV SKLSRDNAIT TFDIAKKYCS  180
GDVKEAVLKK ALKMGEISTY GEYKLYTQKD PGLLLEFYEQ LSERIGPLLA KRRRITPENG  240
AGDHDVNNTL TFYDKGTGKS DSGDDEVEDD QKGDDDDMRH DGENEFSLGS TVPPNGSSPF  300
GSGGNSGRVV FWHGGPPIPP QHGGTITGDG YDKGATYVPS HRPAFDNQIV SGPPYGVPPF  360
MPPVYPSSPL LRGGFPGAGT GAVVSMEVGP VVGEDLVQEP KGKRIPSDGQ TKLEGKRGQN  420
WTNSEVEALV ALRGEMHDEF VRNKQKQGVN TWNKLHIRMQ AMCRGFHKTA NACKKKYSIL  480
YNEYKKDREC LKENGDIEAS GTPGTRSKKC AYFDQMDMWH LKRLENKVGL AGGTADSPCT  540
STEDMEIKEE E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395616.10.0uncharacterized protein LOC112291890
TrEMBLA0A2K1JIC60.0A0A2K1JIC6_PHYPA; Uncharacterized protein
STRINGPP1S48_17V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.14e-06Trihelix family protein