PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0057.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 492aa    MW: 54450.7 Da    PI: 6.3742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1812.9e-56431731129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL+kkv +++    ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd
  Sphfalx0002s0057.1.p  43 LPPGFRFHPTDEELVSYYLAKKVYNSSSFSGHAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 131
                           79*********************9999666588***************99999************************************ PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                           ++v+s+   ++lvg+kktLvfykgrapkgekt+W+mheyrle
  Sphfalx0002s0057.1.p 132 RDVTSSrrPSQLVGMKKTLVFYKGRAPKGEKTNWIMHEYRLE 173
                           ****98666788****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6237207IPR003441NAC domain
PROSITE profilePS5100561.88943207IPR003441NAC domain
PfamPF023651.1E-2844172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MATTTTTAAT AAVCIGSSEV GWQQQQEKKK PEQQAAVGDQ PWLPPGFRFH PTDEELVSYY  60
LAKKVYNSSS FSGHAIAEVD LNKCEPWDLP EKAKMGEKEW YFFSLRDRKY PTGMRTNRAT  120
EAGYWKATGK DRDVTSSRRP SQLVGMKKTL VFYKGRAPKG EKTNWIMHEY RLEGAAAADS  180
NTHHLQPPPC IINNNKDEWV ICRIFQKCPG GKKSFLYSVD SQFLYANSSY HQLDYDTRSS  240
LFPPAAVPLD HSPNPTVTTD DGNFADCETC AATDENGISC CYPNCHDDDE FHQASAHMNH  300
KENTAPAAST WIMKSSKLGG VDLPQSGATI GMLGMDTIHH HHQGGGGGEV MSMTSMVKLC  360
PNYEFSLDPS SAKSHHVSVM PRMDFASQQA FQMHANLIAR KSLERASLRA KPEPYFCDGD  420
DEAQSSQRAL SYGWGGVEHS IFSEPLLTGT DASSCVTQSI YGDQPSLNRY NNNKYGLPDS  480
TTIDSFECMF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-534321320174NAC domain-containing protein 19
3swm_B5e-534321320174NAC domain-containing protein 19
3swm_C5e-534321320174NAC domain-containing protein 19
3swm_D5e-534321320174NAC domain-containing protein 19
3swp_A5e-534321320174NAC domain-containing protein 19
3swp_B5e-534321320174NAC domain-containing protein 19
3swp_C5e-534321320174NAC domain-containing protein 19
3swp_D5e-534321320174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391010.11e-112NAC domain-containing protein 46-like
RefseqXP_024391011.11e-112NAC domain-containing protein 46-like
TrEMBLA0A2K1JR801e-110A0A2K1JR80_PHYPA; Uncharacterized protein
STRINGPP1S46_208V6.11e-111(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.19e-80NAC family protein