PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0098.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 299aa    MW: 32342.4 Da    PI: 8.428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-202271255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++aa+++l+g
  Sphfalx0002s0098.1.p 22 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDAAARALRG 71
                          69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-172179No hitNo description
Gene3DG3DSA:3.30.730.108.7E-312279IPR001471AP2/ERF domain
SMARTSM003807.9E-362285IPR001471AP2/ERF domain
PROSITE profilePS5103222.9582279IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222279IPR016177DNA-binding domain
PfamPF008471.6E-132271IPR001471AP2/ERF domain
PRINTSPR003676.1E-112334IPR001471AP2/ERF domain
PRINTSPR003676.1E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAQRVERAGG NMKPHQAEQG AHFRGVRKRP WGRFAAEIRD PWKKTRVWLG TFDTAEEAAR  60
AYDAAARALR GTKAKTNFAF PCDDQSTSQS STVESWSSPK NLHRAAAPSD GHTRNLHRSG  120
LICDSSWRSR LDLNVSLMDT ACAEEEPSSR PAAATFKTVS VGRSCMSPAA EGIIKCGAAV  180
SGKRGAISPL QMVVFEDTDP MPFCGGDKRQ KGLKMDGIST QRRGDLGVGR DWLGVVDMTG  240
MMQQSPGAET RACHSDCDSS SSVILNSEAT CVDPQQQQDV KPTTRTIPFL DLNLPPCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-201978262ATERF1
3gcc_A4e-201978262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367682.17e-74ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2K1IA662e-72A0A2K1IA66_PHYPA; Uncharacterized protein
STRINGPP1S487_24V6.13e-73(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-23ERF domain protein 12