PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0025.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 425aa    MW: 46923.6 Da    PI: 9.1884
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.12.7e-28341302102
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT....TEEE---SSBTTTTXTTSEEEEESX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY....gFkkvkdeekkskskekiweFkhks 85 
                           Fl+k+y++++++e++ ++sw+ ++ +sfvv+ + efa+++Lp yFkhsnf+SFvRQLn+Y    gFkk+   +         weF ++ 
  Sphfalx0004s0025.1.p  34 FLTKTYHLVSNPETDCIVSWKdSDTSSFVVWRPPEFARDLLPLYFKHSNFSSFVRQLNTYvsdhGFKKLVPYR---------WEFGNDF 113
                           9********************8888***********************************6666666666655.........******* PP

                           XXXXXXXXXXXXXXXXX CS
          HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                           F++g+ +ll+ki+r+ks
  Sphfalx0004s0025.1.p 114 FRRGQIHLLSKIHRRKS 130
                           ***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-4830128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-2731128IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-3031128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2534128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-113457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-117385IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-118698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSLDTFTAAA EGGGTSTSSS LLLYDCHKSV PAPFLTKTYH LVSNPETDCI VSWKDSDTSS  60
FVVWRPPEFA RDLLPLYFKH SNFSSFVRQL NTYVSDHGFK KLVPYRWEFG NDFFRRGQIH  120
LLSKIHRRKS VLPAAASSGK SIPAAAPHHR RTANSASNPP RAAELQQQNH SWSVLSTTTA  180
TPLSSSSPRP SIILDPPAVH DHNVVVGHGR TFISDEYEKL RKDNTLLHSE VSRLRRLLYD  240
DKQQLAAAAS PQQQQACLSR IKGVCGNFGI SLSSVEGLAT KLRDSSAAGV VQQRVDRVDS  300
TANVAGPKQH LVSTLSFLNE LFLQDSTTTS NNSAAACPKV ITISRDHVGA DHHQLDHNTT  360
CKNPPKLFGV PLHTGHKRID PTHHHHHHAA PAVSIREYPE EQQQLVMSCN RLRSDISSDQ  420
YSFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-182912825129Heat shock factor protein 1
5d5v_B5e-182912825129Heat shock factor protein 1
5d5v_D5e-182912825129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361198.19e-62heat shock factor protein HSF24-like isoform X1
TrEMBLA0A2K1IMW02e-60A0A2K1IMW0_PHYPA; Uncharacterized protein
STRINGPP1S12_41V6.14e-61(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-50heat shock transcription factor B4