PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0025.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 421aa    MW: 46485.1 Da    PI: 9.3538
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.3e-31341262102
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           Fl+k+y++++++e++ ++sw+ ++ +sfvv+ + efa+++Lp yFkhsnf+SFvRQLn+YgFkk+   +         weF ++ F++g
  Sphfalx0004s0025.2.p  34 FLTKTYHLVSNPETDCIVSWKdSDTSSFVVWRPPEFARDLLPLYFKHSNFSSFVRQLNTYGFKKLVPYR---------WEFGNDFFRRG 113
                           9********************8888****************************************9998.........*********** PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkks 102
                           + +ll+ki+r+ks
  Sphfalx0004s0025.2.p 114 QIHLLSKIHRRKS 126
                           ***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3227118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5330124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.54E-2931124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-2834124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-163457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-167385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-168698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSLDTFTAAA EGGGTSTSSS LLLYDCHKSV PAPFLTKTYH LVSNPETDCI VSWKDSDTSS  60
FVVWRPPEFA RDLLPLYFKH SNFSSFVRQL NTYGFKKLVP YRWEFGNDFF RRGQIHLLSK  120
IHRRKSVLPA AASSGKSIPA AAPHHRRTAN SASNPPRAAE LQQQNHSWSV LSTTTATPLS  180
SSSPRPSIIL DPPAVHDHNV VVGHGRTFIS DEYEKLRKDN TLLHSEVSRL RRLLYDDKQQ  240
LAAAASPQQQ QACLSRIKGV CGNFGISLSS VEGLATKLRD SSAAGVVQQR VDRVDSTANV  300
AGPKQHLVST LSFLNELFLQ DSTTTSNNSA AACPKVITIS RDHVGADHHQ LDHNTTCKNP  360
PKLFGVPLHT GHKRIDPTHH HHHHAAPAVS IREYPEEQQQ LVMSCNRLRS DISSDQYSFN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-202912425129Heat shock factor protein 1
5d5v_B4e-202912425129Heat shock factor protein 1
5d5v_D4e-202912425129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361198.14e-64heat shock factor protein HSF24-like isoform X1
TrEMBLA0A2K1IMW01e-62A0A2K1IMW0_PHYPA; Uncharacterized protein
STRINGPP1S12_41V6.12e-63(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-53heat shock transcription factor B4