PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0004s0190.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

ERF

Protein Properties

Length: 578aa MW: 62353.8 Da PI: 5.6236

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0004s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.7	1.3e-08	192	235	2	48
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 y+GVr ++ + +++eIr ++ +k+++lg++ t eAa+a++a Sphfalx0004s0190.1.p 192 EYRGVRVRPGVKGFLVEIRPKRW---KKTIWLGTYPTSPEAARAYDA 235 59*****9999**9544...6******88****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.5E-14	192	251	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.629	192	256	IPR001471	AP2/ERF domain
Pfam	PF00847	5.5E-6	192	235	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-6	192	255	IPR001471	AP2/ERF domain
CDD	cd00018	1.48E-12	193	251	No hit	No description
SuperFamily	SSF54171	3.6E-9	193	249	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MPDQKLCTSE PRTAELQVFA ASLRGGECPE FDRVSTALFS KEFSGKPSLC CPAAAAAAAG 60 TSSLNAALLT TAKSHHHPLA AKQSLLASSD STAKLRSTKS PKIRKPCLKN VGSGPASLVQ 120 VGARAVVQSV GTTGSFQARL QWKNLTAGHE AAFFRQSPAA SQKGSHLKLE IVETHAAASI 180 NPPPEYRDSP TEYRGVRVRP GVKGFLVEIR PKRWKKTIWL GTYPTSPEAA RAYDAGIFYT 240 GKSIPYNFQE SKDSFSPLPE HLSLDDSDPE IMDQITCFVK AKAREAAKRS KALEAAARKP 300 RKVEPTLQGS QVLQTGNKKP DHIVSSSSSS SVNEVQGCCT LPATGLSSDK RGMSLHVKDE 360 ADSAGCSDLV NSNPFENLEP LPGNLGEYST TEQELLLGDD HSLDCWGQIR AQTGVNGYSP 420 QSGILEDKDL CITQHTSEYL TEEDMQVPDP PTCCFQSVLP SFDNDGNLGN PATLGLQDSW 480 GLLPASFDLG VWDPSLGSDG SLLQKNFLNM EACDSSYVWW HQAKQLHDLG FARTHELPED 540 VLLLCQNGED ASLKSGCINS VVQKPDDDDE FSVSLWQ*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MPDQKLCTSE PRTAELQVFA ASLRGGECPE FDRVSTALFS KEFSGKPSLC CPAAAAAAAG  60
TSSLNAALLT TAKSHHHPLA AKQSLLASSD STAKLRSTKS PKIRKPCLKN VGSGPASLVQ  120
VGARAVVQSV GTTGSFQARL QWKNLTAGHE AAFFRQSPAA SQKGSHLKLE IVETHAAASI  180
NPPPEYRDSP TEYRGVRVRP GVKGFLVEIR PKRWKKTIWL GTYPTSPEAA RAYDAGIFYT  240
GKSIPYNFQE SKDSFSPLPE HLSLDDSDPE IMDQITCFVK AKAREAAKRS KALEAAARKP  300
RKVEPTLQGS QVLQTGNKKP DHIVSSSSSS SVNEVQGCCT LPATGLSSDK RGMSLHVKDE  360
ADSAGCSDLV NSNPFENLEP LPGNLGEYST TEQELLLGDD HSLDCWGQIR AQTGVNGYSP  420
QSGILEDKDL CITQHTSEYL TEEDMQVPDP PTCCFQSVLP SFDNDGNLGN PATLGLQDSW  480
GLLPASFDLG VWDPSLGSDG SLLQKNFLNM EACDSSYVWW HQAKQLHDLG FARTHELPED  540
VLLLCQNGED ASLKSGCINS VVQKPDDDDE FSVSLWQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	7e-10	ERF family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0004s0190.1.p