PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0331.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 191aa    MW: 20754.3 Da    PI: 7.8233
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0331.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.5e-42131131101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++
  Sphfalx0004s0331.2.p  13 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQS 101
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           l+ael+++++e+
  Sphfalx0004s0331.2.p 102 LQAELNAVRQEI 113
                           ********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.55812113IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-4213110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVGNQGQVNS STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFACVHKIFG ASNVSKMLME  60
VPESQRADAA SSLVYEANAR IRDPVYGCMG AISALQQQAQ SLQAELNAVR QEIMRYRRHD  120
NAVADAATAD ATAAMMVQTS GYQGHSLHDR GVTSNPLSTQ TTPSEVYTVP SPNSVTTPDL  180
KERSYWSPLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4791167114LOB family transfactor Ramosa2.1
5ly0_B7e-4791167114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362454.13e-81LOB domain-containing protein 15-like
SwissprotQ9AT612e-61LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A2R6WX813e-87A0A2R6WX81_MARPO; Uncharacterized protein
STRINGPP1S156_26V6.11e-80(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-61LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]