PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0055.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 584aa    MW: 64728.7 Da    PI: 6.3072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20256305255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a++aa+++++g
  Sphfalx0005s0055.1.p 256 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDAAARNFRG 305
                           7********.**********94....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-32256314IPR001471AP2/ERF domain
SMARTSM003802.9E-37256319IPR001471AP2/ERF domain
PfamPF008471.8E-13256305IPR001471AP2/ERF domain
PROSITE profilePS5103224.737256313IPR001471AP2/ERF domain
CDDcd000181.21E-20256315No hitNo description
SuperFamilySSF541715.43E-22256314IPR016177DNA-binding domain
PRINTSPR003672.9E-11257268IPR001471AP2/ERF domain
PRINTSPR003672.9E-11279295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MCEFMIFRSC DNYTYAAQEK EKQQRRLDKL EASESRPDSS SYDSTSVSRT KPRLPDPISE  60
VSLMVSALAQ PSSLVPSSDG AADYSYEAPS SSHRASPSTQ DYQQYGDFRA GEGGGEEGEQ  120
VAPTAGQKRF RTEERQEYDG VPYTQRLWVD PARAIAAAWQ PLGEAARTRA DTGTILEARQ  180
GYSGSMTQQP HINYHSAPKK LPEIRRPKEE AITIKYEERE VQLQEEREAS SMQSVEAGPS  240
AAAAHQPEAQ PVKKRRYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE DAALAYDAAA  300
RNFRGLRAKL NFPDHPPREP QEASPLSLPS STTVSSLPVP SSTVMTLSTL APSTTWATTS  360
SMAGGDSMRQ VPSNIGNWSA AAHRAPTSST SLHNTPLIPM TNCAQMSTTL PQPPSNLPPP  420
HMTYLSPDSM QQLMTYDQQQ ILWQRHNRFR FAAPTTPPTD YGFPYHSQNV LQQQPRSLNM  480
IQYRLEHVQS GNLQGSQDQQ AIPTMPVNMS GQQRQQASAF AAGTSQLSLR QQPELSYDQI  540
FEQPDNGWST ESMLGQNSTG LSLGQDFINI NTYFPEEQLP PQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22253313263ATERF1
3gcc_A2e-22253313263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-23related to AP2 6l