PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0172.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 479aa    MW: 53096.9 Da    PI: 6.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-09167209348
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                           y+GVr+++  + +++eIr  ++   +++++lg++ t +eAa a++a
  Sphfalx0005s0172.1.p 167 YRGVRQRPGVKGYLVEIRPRRW---KTTIWLGTYTTLFEAALAYDA 209
                           9*******9999******9544...6******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-5166229IPR001471AP2/ERF domain
PROSITE profilePS5103211.733166230IPR001471AP2/ERF domain
CDDcd000182.40E-11167225No hitNo description
Gene3DG3DSA:3.30.730.103.9E-14167225IPR001471AP2/ERF domain
PfamPF008471.2E-5167209IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-8167223IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MPDQKICSSG QRTAELREFE RLAARSYNCQ DRQTPSLRDE FCKFNRLSTA FISKDFDGKP  60
SPCAPATLGD EFVLAKPPVG AAVRDSAVKA KSSSPKIAPR RAPLKTVRPT LSLKVAARAV  120
KSHESLTPES KGEAWLSPKK PQSPHSKAAT KLDKVKKSLT PESPQPYRGV RQRPGVKGYL  180
VEIRPRRWKT TIWLGTYTTL FEAALAYDAG IFYTGKSIPF NFEESEGSFP PLPQHLSLAD  240
FRAENMDKVK TFVKEQALKA ARRAKLLSKG VQQQLCKQEI DSHHSSSDEV QGRCVLSAVS  300
ASEKELGSLH VKKEHCDADW DQGCLPKEEI LAGDEDLKTT KQTSCFTDKL FFDPSHDEES  360
MDADNGLHLL CCCTNDGNLG TLGPYSMGCQ SFDQSVQDPF PIDGISCFNF KACDSNAYPQ  420
VKSFCDFTFA ITQPDDPMGL PLSVEDLSFQ PSWKYLSDED PDDDEFPILL WSYAYSKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.12e-09related to AP2 9