PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0290.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CPP
Protein Properties Length: 610aa    MW: 64688.2 Da    PI: 7.8138
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0290.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.32.7e-12127167142
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  Sphfalx0005s0290.2.p 127 KKCKQCNCKNSRCLKLYCECFASGTYCEG-CNCVNCCNNVEN 167
                           589*************************9.********9875 PP
2TCR51.42.1e-16211250140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Sphfalx0005s0290.2.p 211 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCVDCKNFE 250
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-13127167IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.321128251IPR005172CRC domain
PfamPF036381.7E-8130164IPR005172CRC domain
SMARTSM011142.0E-20211252IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13214249IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAEEPPEQIA GVKTDAPGSP AASSNGAHQV QSMAFAPTSP AVSRTVNRPV DLDFPQPVDT  60
VSGPMQGVQG DHATRKAVPR QLDFTSMYGG PAGSAEGPVR TQPPVKHGTP RAERSRPAFD  120
SKDGTPKKCK QCNCKNSRCL KLYCECFASG TYCEGCNCVN CCNNVENESV RQEAVEATLE  180
RNPNAFRPKI FSSPSLRDLR EDVGEQPLIG KHNKGCHCKK SGCLKKYCEC FQANILCSDN  240
CKCVDCKNFE GSEERRALFH GDHNMGLNFM VQMAANGSSQ TIPGYLSPSP PMKKRRTHEL  300
VFAGPGLKEQ GPPGRTPSLP VQGHLAATVS TAVNTPITSM STIAGGSASA APVKVVHRSL  360
LAGVVQLEAI QELCKLLVIV SAEAQKDFLA KHSLPCITAQ QATETGGSKS SKEPSPGIGR  420
EEEVPKQKSD ERSDPHESEK ASPARMVSAV GDDVEVDTAT QQRAMSPGTL ALMCDEKDPL  480
FTAPPSPSGG LCSTEFSNTT PSHPGQLYAE QERAILLEYR ECLRRIIAVG KRRASQFATE  540
VAQAEMYAAT SLQQRGQPGS DGAQHPRPVA APSAPVIVGS TGLCTIGMKP AKLGLPLQTA  600
AAPTSSVSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-3013026012132Protein lin-54 homolog
5fd3_B5e-3013026012132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293297KRRTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361559.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1IIF00.0A0A2K1IIF0_PHYPA; Uncharacterized protein
STRINGPP1S10_254V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein